Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SaO17_RS04835 Genome accession   NZ_CP032051
Coordinates   954602..955588 (+) Length   328 a.a.
NCBI ID   WP_000959280.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 949602..960588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO17_RS04810 (SaO17_00886) opp4B 949815..950777 (+) 963 WP_000593670.1 oligopeptide ABC transporter permease -
  SaO17_RS04815 (SaO17_00887) opp4C 950789..951670 (+) 882 WP_001180264.1 oligopeptide ABC transporter permease -
  SaO17_RS04820 (SaO17_00888) trpS 951712..952701 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  SaO17_RS04825 (SaO17_00889) spxA 952996..953391 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  SaO17_RS04830 (SaO17_00890) mecA 953762..954481 (+) 720 WP_001217736.1 adaptor protein MecA -
  SaO17_RS04835 (SaO17_00891) coiA 954602..955588 (+) 987 WP_000959280.1 competence protein CoiA family protein Machinery gene
  SaO17_RS04840 (SaO17_00892) pepF 955636..957444 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  SaO17_RS04845 (SaO17_00893) yjbH 957904..958710 (-) 807 WP_118848084.1 protease adaptor protein YjbH -
  SaO17_RS04850 (SaO17_00894) - 958733..959098 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  SaO17_RS04855 (SaO17_00895) - 959202..959795 (-) 594 WP_000224616.1 CYTH domain-containing protein -
  SaO17_RS04860 (SaO17_00896) - 959981..960328 (+) 348 WP_001242107.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38720.32 Da        Isoelectric Point: 9.6486

>NTDB_id=313357 SaO17_RS04835 WP_000959280.1 954602..955588(+) (coiA) [Staphylococcus aureus strain O17]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMMQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKGNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLH
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLKISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=313357 SaO17_RS04835 WP_000959280.1 954602..955588(+) (coiA) [Staphylococcus aureus strain O17]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATGCAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAGGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAATTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTGCAT
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAAAATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.341

100

0.963
  coiA Staphylococcus aureus N315

96.341

100

0.963

Multiple sequence alignment