Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SaO17_RS02875 Genome accession   NZ_CP032051
Coordinates   564827..565396 (+) Length   189 a.a.
NCBI ID   WP_000872875.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O17     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 559827..570396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO17_RS02850 (SaO17_00520) cysE 561007..561687 (+) 681 WP_001547606.1 serine O-acetyltransferase -
  SaO17_RS02855 (SaO17_00521) cysS 561671..563071 (+) 1401 WP_000631972.1 cysteine--tRNA ligase -
  SaO17_RS02860 (SaO17_00522) - 563064..563468 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  SaO17_RS02865 (SaO17_00523) rlmB 563476..564222 (+) 747 WP_000390334.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SaO17_RS02870 (SaO17_00524) - 564222..564746 (+) 525 WP_000664738.1 NYN domain-containing protein -
  SaO17_RS02875 (SaO17_00525) sigH 564827..565396 (+) 570 WP_000872875.1 RNA polymerase sigma factor Regulator
  SaO17_RS02880 rpmG 565511..565654 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  SaO17_RS02885 (SaO17_00526) secE 565710..565892 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SaO17_RS02890 (SaO17_00527) nusG 565905..566453 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SaO17_RS02895 (SaO17_00528) rplK 566634..567056 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SaO17_RS02900 (SaO17_00529) rplA 567264..567956 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  SaO17_RS02910 (SaO17_00530) rplJ 568228..568728 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  SaO17_RS02915 (SaO17_00531) rplL 568771..569139 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SaO17_RS02920 (SaO17_00532) - 569314..569922 (+) 609 WP_000020308.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23079.92 Da        Isoelectric Point: 9.6015

>NTDB_id=313352 SaO17_RS02875 WP_000872875.1 564827..565396(+) (sigH) [Staphylococcus aureus strain O17]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKII

Nucleotide


Download         Length: 570 bp        

>NTDB_id=313352 SaO17_RS02875 WP_000872875.1 564827..565396(+) (sigH) [Staphylococcus aureus strain O17]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGGAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCTATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATAATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment