Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   Ahae11616_RS01295 Genome accession   NZ_CP032002
Coordinates   276056..276766 (+) Length   236 a.a.
NCBI ID   WP_008941136.1    Uniprot ID   C0VN50
Organism   Acinetobacter haemolyticus strain 11616     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 271056..281766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ahae11616_RS01280 (Ahae11616_01295) ponA 271602..274193 (-) 2592 WP_004641329.1 penicillin-binding protein PBP1a -
  Ahae11616_RS01285 (Ahae11616_01300) comM 274357..275415 (+) 1059 WP_004641327.1 pilus assembly protein PilM Machinery gene
  Ahae11616_RS01290 (Ahae11616_01305) pilN 275415..276059 (+) 645 WP_004641325.1 PilN domain-containing protein Machinery gene
  Ahae11616_RS01295 (Ahae11616_01310) pilO 276056..276766 (+) 711 WP_008941136.1 type 4a pilus biogenesis protein PilO Machinery gene
  Ahae11616_RS01300 (Ahae11616_01315) pilP 276766..277293 (+) 528 WP_005088514.1 pilus assembly protein PilP Machinery gene
  Ahae11616_RS01305 (Ahae11616_01320) pilQ 277355..279486 (+) 2132 Protein_248 type IV pilus secretin PilQ -
  Ahae11616_RS01310 (Ahae11616_01325) aroK 279525..280067 (+) 543 WP_005087029.1 shikimate kinase AroK -
  Ahae11616_RS01315 (Ahae11616_01330) aroB 280088..281173 (+) 1086 WP_008941139.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26973.56 Da        Isoelectric Point: 4.8810

>NTDB_id=313279 Ahae11616_RS01295 WP_008941136.1 276056..276766(+) (pilO) [Acinetobacter haemolyticus strain 11616]
MSQDELNDLNQEGAAVKKKKMTVEQFFQQFNTLDMNNYGSWPWSVKVTCWIFILLAVVALGYFVVIQKQLQTIANAEARE
QSLLNEFREKESKLRNLQQYQTQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEKEVRQEFFIEQP
ISLEATGDYHAFGAFATGIAALPRIVTLHDFIVEAKEDTQKKSDIPVVHYTVKAKTYRYVGADDQVDSTAVSGGQR

Nucleotide


Download         Length: 711 bp        

>NTDB_id=313279 Ahae11616_RS01295 WP_008941136.1 276056..276766(+) (pilO) [Acinetobacter haemolyticus strain 11616]
ATGAGTCAAGATGAACTAAATGATCTCAATCAAGAAGGCGCAGCTGTAAAGAAAAAGAAAATGACAGTTGAGCAATTTTT
TCAGCAATTTAATACCTTAGATATGAACAACTATGGCAGTTGGCCATGGTCGGTAAAAGTGACGTGTTGGATTTTTATTT
TACTCGCTGTTGTGGCATTGGGTTATTTCGTTGTGATCCAAAAGCAGCTACAGACGATAGCTAATGCTGAAGCGCGTGAA
CAAAGTCTATTAAATGAGTTTAGAGAAAAGGAATCTAAATTACGCAACTTGCAGCAATACCAAACTCAATTGCAAGAAAT
GGAAGCGAATTTTAATCAGCAGCTTGAGCAGTTGCCAAAAGAAACTGAAATTCCGAGTTTGGTTGAGGATATAAACTTAA
CTGGGGTAAATTCGGGTCTGAAATTTAAAAATATTCGTTTAGAAAAAGAAGTTAGACAAGAGTTCTTCATTGAGCAACCA
ATTAGTCTGGAAGCAACAGGCGATTATCATGCCTTCGGTGCTTTTGCGACAGGTATTGCCGCTTTGCCTCGAATCGTGAC
TTTGCATGATTTTATCGTCGAAGCGAAAGAAGATACTCAGAAAAAATCTGATATCCCTGTTGTCCATTATACGGTTAAAG
CAAAAACTTATCGTTATGTTGGGGCGGATGATCAGGTTGATAGCACTGCTGTTTCAGGGGGGCAACGCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0VN50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

74.348

97.458

0.725
  comO Acinetobacter baylyi ADP1

71.861

97.881

0.703

Multiple sequence alignment