Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   Ahae2126ch_RS15450 Genome accession   NZ_CP031991
Coordinates   3195046..3196476 (+) Length   476 a.a.
NCBI ID   WP_005083966.1    Uniprot ID   N9F1D8
Organism   Acinetobacter haemolyticus strain 2126ch     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3190046..3201476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ahae2126ch_RS15430 (Ahae2126ch_15585) thrC 3190328..3191467 (+) 1140 WP_004637599.1 threonine synthase -
  Ahae2126ch_RS15435 (Ahae2126ch_15590) pbpG 3191529..3192593 (-) 1065 WP_004637598.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  Ahae2126ch_RS15440 (Ahae2126ch_15595) - 3192804..3193439 (+) 636 WP_005083960.1 response regulator -
  Ahae2126ch_RS15445 (Ahae2126ch_15600) pilS 3193458..3195023 (+) 1566 WP_005087910.1 PAS domain-containing sensor histidine kinase Regulator
  Ahae2126ch_RS15450 (Ahae2126ch_15605) pilR 3195046..3196476 (+) 1431 WP_005083966.1 sigma-54 dependent transcriptional regulator Regulator
  Ahae2126ch_RS15455 (Ahae2126ch_15610) - 3196518..3197684 (-) 1167 WP_008942249.1 S41 family peptidase -
  Ahae2126ch_RS15460 (Ahae2126ch_15615) gpmI 3197694..3199238 (-) 1545 WP_008942248.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  Ahae2126ch_RS15465 (Ahae2126ch_15620) lptG 3199363..3200433 (-) 1071 WP_004637591.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53565.53 Da        Isoelectric Point: 6.1502

>NTDB_id=313231 Ahae2126ch_RS15450 WP_005083966.1 3195046..3196476(+) (pilR) [Acinetobacter haemolyticus strain 2126ch]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVQHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLIQKALNRPRPEQEAAETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILL
LANHFIQRICQEWELPAKTLSSRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRSPISMPSAPSYSQ
EEVEQPQYTSPSTSSKKLPPEGLERYLENIEKEVLLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEEDDT

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=313231 Ahae2126ch_RS15450 WP_005083966.1 3195046..3196476(+) (pilR) [Acinetobacter haemolyticus strain 2126ch]
ATGGCAACTAAACAACCACTCGTCTTGCTCGTAGACGACGAAGAGGACTTGTGTCTTCTCATGCAAATGACACTTGCACG
TATGGGAATTAAGACACATTTGGCTTATCGTGTAGAGCAAGCAAAAAAATTCTTTACTGAATTTCAATATGATGCATGTT
TAACTGATTTAAATCTTCCAGACGGCAACGGTTTAGATCTCGTCCAACATGTCACCCAAAATTACCCAAATACTCCGATC
GCTGTGCTGACGGCCTATGGCAATATGGACATTGCGATTGCAGCATTAAAAGCCGGGGCATTTGACTTCGTTAGCAAACC
AGTCAACCAAGTGCATTTGGATCAATTGATTCAAAAAGCATTGAATCGACCACGACCTGAGCAAGAAGCGGCTGAAACAG
CCTTAGAAAATAAACTACTGATTGGACGTTCTGCGCCGATTCAACAACTGCGCATTGCATTAAAGAAAATCGCGCGATCA
CAAGCGCCTGTCTTTATCACCGGGGAGTCGGGAACTGGAAAAGAAGTTGTTGCCAACTTGGTTCATCGCTTAAGTAATCG
TAGTGAAGGGCCTTTTATTGCCATAAACTGCGGTGCGATTCCAACAGAACTGATGGAAAGTGAGCTTTTCGGGCACAAAA
AAGGCAGTTTCACTGGGGCGACCCAAGATAAACAAGGTTTAATTTTATCAGCACATGGCGGTAGTTTATTTCTTGATGAA
ATCGCTGAACTGCCACTCAACATGCAAGTAAAATTATTGCGTGCAGTGCAAGAAAAGAAAATCCGCCCTGTAGGCTCAGA
CCAAGAAATTGATGTCGATTTCCGTGTGATTAGCGCCAGTCACCAAGATCTTGAGTTACTGGTTCAGCAAGGACGATTCC
GACAGGATTTATTTTTCCGTATCCACGTTATGGATATTGTACTCCCACCATTACGTGAACGTGGACAGGACATCCTGTTA
TTAGCGAATCATTTTATCCAAAGAATTTGCCAAGAATGGGAACTGCCTGCCAAGACATTATCGTCTCGTGCAGAGCAATT
TTTATTACAACAATATTTTCCTGGTAATGTGCGCGAACTACGCAATATTATTGAACGTGCAATCACGCTCAGCGATGATG
AAACGATTGATTTAGCGCACTTACAAACAGCGCCATTACGCAGTCCAATTTCAATGCCATCAGCGCCATCTTATAGCCAA
GAAGAAGTTGAGCAGCCACAATACACCAGCCCAAGCACAAGTTCGAAAAAACTTCCACCTGAAGGTTTAGAGCGTTATTT
AGAAAATATTGAAAAAGAAGTGCTACTTAATGCATTAAATCTAACCCATTGGAATCGAACGCTCGCCGCGAAGAAACTCG
GAATGACCTTCCGTTCCTTGCGTTATCGTTTGAAAAAATTCGGATTAGATACTGAAGAAGATGACACCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(427-467)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9F1D8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

84.454

100

0.845
  pilR Pseudomonas aeruginosa PAK

51.62

97.269

0.502

Multiple sequence alignment