Detailed information NTG0313227

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Ahae2126ch_RS15020
• Genome accession: NZ_CP031991
• Coordinates: 3104906..3105766 (+)
• Length: 286 a.a.
• NCBI ID: WP_005083855.1
• Uniprot ID: N9F152
• Organism: Acinetobacter haemolyticus strain 2126ch
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3099906..3110766

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Ahae2126ch_RS15000 (Ahae2126ch_15155)	secG	3100430..3100759 (-)	330	WP_004637686.1	preprotein translocase subunit SecG	-
Ahae2126ch_RS15005 (Ahae2126ch_15160)	tpiA	3100772..3101563 (-)	792	WP_005088004.1	triose-phosphate isomerase	-
Ahae2126ch_RS15010 (Ahae2126ch_15165)	pilB	3101940..3103655 (+)	1716	WP_005083851.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Ahae2126ch_RS15015 (Ahae2126ch_15170)	pilC	3103680..3104906 (+)	1227	WP_005083853.1	type II secretion system F family protein	Machinery gene
Ahae2126ch_RS15020 (Ahae2126ch_15175)	pilD	3104906..3105766 (+)	861	WP_005083855.1	A24 family peptidase	Machinery gene
Ahae2126ch_RS15025 (Ahae2126ch_15180)	coaE	3105768..3106373 (+)	606	WP_005088002.1	dephospho-CoA kinase	-
Ahae2126ch_RS15030 (Ahae2126ch_15185)	-	3106370..3107281 (-)	912	WP_017394516.1	DMT family transporter	-
Ahae2126ch_RS15035 (Ahae2126ch_15195)	rlmB	3107321..3108067 (-)	747	WP_004637678.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
Ahae2126ch_RS15040 (Ahae2126ch_15200)	-	3108176..3108502 (-)	327	WP_004637677.1	pyrimidine/purine nucleoside phosphorylase	-
Ahae2126ch_RS15045 (Ahae2126ch_15205)	recN	3108836..3110497 (+)	1662	WP_005087998.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32075.38 Da
• Isoelectric Point: 6.6694

>NTDB_id=313227 Ahae2126ch_RS15020 WP_005083855.1 3104906..3105766(+) (pilD) [Acinetobacter haemolyticus strain 2126ch]
MQQFLNYFIENPTALYLAVGLFSLCIGSFLNVVIFRTPRMMEQEWQQECQMLLHPEQPIIEEEKLTLSHPASTCPKCHTP
IRWYQNIPVISWLVLRGKCGACQNPISIRYPLIELLTMGCSLVVVAVFGPTLQMLFGLVLTWVLITLTFIDFDTQLLPDR
FTLPLAALGLAINSFAIYTTANSAIWGYVIGFLCLWIVYYLFKIFTGKEGMGYGDFKLLAALGAWMGPMLLPLIVLLSSV
VGAIIGIILLKMRGENQPFAFGPYIAIAGWIAFLWGDQIMKVYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=313227 Ahae2126ch_RS15020 WP_005083855.1 3104906..3105766(+) (pilD) [Acinetobacter haemolyticus strain 2126ch]
ATGCAGCAATTCTTAAATTATTTTATCGAAAACCCAACTGCACTTTATCTAGCAGTTGGGCTTTTTAGTTTATGTATTGG
TAGCTTTCTGAATGTTGTTATTTTCCGAACGCCAAGAATGATGGAGCAGGAATGGCAACAAGAATGCCAAATGCTACTCC
ATCCAGAACAACCTATCATTGAAGAAGAAAAGCTGACTTTAAGTCACCCTGCATCAACTTGCCCTAAGTGCCACACCCCT
ATCCGCTGGTATCAAAATATCCCAGTGATCAGCTGGTTAGTACTCCGTGGTAAATGCGGTGCCTGTCAAAACCCGATTAG
TATTCGTTACCCATTGATCGAGTTATTGACCATGGGATGCTCTCTAGTGGTCGTTGCTGTTTTTGGTCCTACCCTCCAAA
TGCTATTCGGTTTAGTTCTGACTTGGGTGTTAATTACCCTTACTTTTATTGATTTTGATACACAATTGCTTCCAGACCGC
TTTACACTCCCATTGGCAGCACTCGGTTTAGCCATTAATAGTTTTGCGATCTACACCACAGCAAACTCAGCAATTTGGGG
TTATGTGATTGGCTTCCTTTGCCTTTGGATTGTTTATTATCTTTTTAAAATATTTACTGGCAAAGAGGGTATGGGCTATG
GCGATTTTAAATTACTGGCTGCATTAGGGGCTTGGATGGGTCCAATGCTCTTGCCTTTAATTGTGTTACTTTCTTCTGTT
GTCGGTGCAATTATTGGTATCATCTTATTGAAAATGCGCGGTGAAAATCAGCCCTTTGCTTTTGGCCCCTATATTGCAAT
TGCAGGCTGGATCGCATTTTTATGGGGTGATCAAATTATGAAAGTTTATTTAGGTGGCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: N9F152

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	84.965	100	0.85
pilD	Acinetobacter baumannii D1279779	83.916	100	0.839
pilD	Vibrio cholerae strain A1552	55.97	93.706	0.524
pilD	Vibrio campbellii strain DS40M4	54.135	93.007	0.503
pilD	Neisseria gonorrhoeae MS11	47.253	95.455	0.451