Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   Ahae2126ch_RS01720 Genome accession   NZ_CP031991
Coordinates   369792..370739 (+) Length   315 a.a.
NCBI ID   WP_008941160.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain 2126ch     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 371619..372784 369792..370739 flank 880


Gene organization within MGE regions


Location: 369792..372784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ahae2126ch_RS01720 (Ahae2126ch_01740) comB 369792..370739 (+) 948 WP_008941160.1 PilW family protein Machinery gene
  Ahae2126ch_RS01725 (Ahae2126ch_01745) pilX 370742..371476 (+) 735 WP_004641259.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Ahae2126ch_RS01730 (Ahae2126ch_01750) - 371619..372784 (+) 1166 WP_125316763.1 IS3 family transposase -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34020.49 Da        Isoelectric Point: 7.6132

>NTDB_id=313202 Ahae2126ch_RS01720 WP_008941160.1 369792..370739(+) (comB) [Acinetobacter haemolyticus strain 2126ch]
MVSLALGLIIVAAATQLFITGLTSYKLQKAMAHIQDSASFGLNFIVDDIRKANLSSPMPAVNDQIAYSGIILTSKNVGSK
INLNCTACFSDNKLTSFGNANVTGLANDQLLIRYRSPQDGFDCSGNTTTTNTFVVQRYFVGSTSTDLRQSLRCQAAQYTQ
AQLDAATEANPLLLSWSASQVILPNVDFFQVRLGYIDGELESANSSLAYTDIKNYMALSAKTKNIDGVVQTVRPHVHAVQ
IGVLVQSADSAGHQSIIKDRNKQPFQVLGTQVTLTPTYQDTRLRQVVDQTISLRNAMGWVTEGCDSSKTTCTGGA

Nucleotide


Download         Length: 948 bp        

>NTDB_id=313202 Ahae2126ch_RS01720 WP_008941160.1 369792..370739(+) (comB) [Acinetobacter haemolyticus strain 2126ch]
ATGGTCTCTTTGGCTCTAGGCTTAATTATTGTCGCTGCAGCAACACAATTATTTATTACTGGCCTGACCAGTTATAAGCT
ACAAAAGGCGATGGCACATATTCAGGATAGCGCAAGTTTCGGATTAAACTTCATCGTTGATGATATTCGTAAAGCAAATT
TGAGCTCGCCGATGCCAGCGGTCAATGATCAAATTGCTTATTCAGGAATCATTCTAACCTCAAAGAATGTTGGATCAAAA
ATTAATTTAAATTGCACGGCATGCTTTTCTGATAACAAATTAACCAGCTTTGGAAATGCCAATGTTACAGGTCTAGCTAA
TGATCAGTTGTTAATTCGTTATCGATCTCCACAAGATGGTTTCGATTGTTCTGGAAATACTACAACAACTAATACATTTG
TTGTTCAGCGTTATTTTGTTGGTTCAACATCAACTGATTTACGTCAATCTCTGCGTTGTCAAGCTGCTCAATATACACAA
GCACAATTAGATGCTGCCACTGAAGCAAATCCTCTGCTATTAAGTTGGTCAGCAAGTCAGGTGATTTTACCAAATGTAGA
CTTTTTTCAAGTTCGTCTAGGTTATATCGATGGTGAGCTTGAGAGCGCAAATAGCTCACTTGCTTATACTGATATAAAAA
ATTATATGGCTTTGAGTGCTAAAACCAAGAATATAGATGGCGTTGTTCAAACTGTACGCCCACATGTGCATGCTGTTCAA
ATAGGTGTATTGGTCCAATCTGCCGATTCTGCGGGGCATCAATCTATTATCAAAGATCGGAATAAACAGCCATTTCAGGT
ACTTGGTACTCAGGTAACGTTAACACCAACCTATCAAGATACTCGATTACGTCAGGTTGTAGATCAAACAATATCACTTC
GTAATGCAATGGGTTGGGTAACTGAAGGGTGTGATAGCAGTAAAACGACTTGTACGGGAGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(137-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Acinetobacter baylyi ADP1

49.521

99.365

0.492

Multiple sequence alignment