Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   Ahae2126ch_RS01725 Genome accession   NZ_CP031991
Coordinates   370742..371476 (+) Length   244 a.a.
NCBI ID   WP_004641259.1    Uniprot ID   N9FBJ4
Organism   Acinetobacter haemolyticus strain 2126ch     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 371619..372784 370742..371476 flank 143


Gene organization within MGE regions


Location: 370742..372784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ahae2126ch_RS01725 (Ahae2126ch_01745) pilX 370742..371476 (+) 735 WP_004641259.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Ahae2126ch_RS01730 (Ahae2126ch_01750) - 371619..372784 (+) 1166 WP_125316763.1 IS3 family transposase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26768.39 Da        Isoelectric Point: 6.0988

>NTDB_id=313203 Ahae2126ch_RS01725 WP_004641259.1 370742..371476(+) (pilX) [Acinetobacter haemolyticus strain 2126ch]
MMHNQKGSTLIIVLMIVLLITIIGTLAIRQSVSSLKLVSNNQMQTLLLQNSDAALMAFQNPAFQQHIAATNGIVGFFKNE
NNRDAELVMCFEGTEPFQLSNASYRLNSTSFVNMATGSGACHKDSVSSGRSAVVTQVYIKRETEQVTVPFADLARGTESL
GAKTENNIRLRVYVISVMKGLLSDPNKTLFTDSTDPKQGCLTKSIDHDGDNQVANCLKSNEENPLYNMQVAEYRFLSDFE
PSGS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=313203 Ahae2126ch_RS01725 WP_004641259.1 370742..371476(+) (pilX) [Acinetobacter haemolyticus strain 2126ch]
ATGATGCATAATCAAAAAGGTTCAACACTCATTATCGTACTCATGATAGTGCTGTTGATCACGATCATTGGAACGCTTGC
TATTCGCCAAAGTGTGAGTTCATTAAAGTTGGTGAGTAACAATCAGATGCAAACATTGTTGTTACAAAATTCTGATGCAG
CATTAATGGCTTTCCAAAATCCTGCATTTCAGCAACATATTGCTGCAACAAATGGCATTGTTGGTTTCTTTAAGAATGAA
AACAACAGAGATGCTGAATTGGTGATGTGCTTTGAGGGCACTGAACCCTTTCAATTGAGTAATGCAAGCTATCGTTTAAA
CAGCACCTCTTTTGTAAATATGGCAACGGGGAGTGGAGCTTGCCATAAAGATTCAGTATCGAGTGGTCGTTCTGCTGTTG
TGACACAGGTATACATTAAACGCGAGACAGAACAGGTGACTGTGCCATTTGCTGATTTAGCACGCGGTACTGAAAGTCTA
GGTGCAAAAACTGAAAATAATATCCGTTTACGTGTTTACGTTATTTCAGTAATGAAAGGCTTACTTTCTGATCCTAATAA
AACATTGTTTACAGATAGTACGGATCCTAAACAAGGTTGTTTGACTAAAAGTATTGATCACGATGGCGACAATCAGGTAG
CCAATTGTTTAAAAAGTAATGAAGAAAACCCTTTGTATAATATGCAAGTAGCGGAATATCGCTTCTTATCTGACTTTGAA
CCTTCAGGTTCATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9FBJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baylyi ADP1

49.378

98.77

0.488

Multiple sequence alignment