Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Ahae5227_RS02035 Genome accession   NZ_CP031988
Coordinates   437440..438099 (-) Length   219 a.a.
NCBI ID   WP_008941210.1    Uniprot ID   C0VNG5
Organism   Acinetobacter haemolyticus strain 5227     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 432440..443099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ahae5227_RS02010 (Ahae5227_02045) - 432882..433169 (+) 288 WP_004641115.1 lipid asymmetry maintenance protein MlaB -
  Ahae5227_RS02015 (Ahae5227_02050) - 433289..435205 (+) 1917 WP_005086869.1 acyltransferase family protein -
  Ahae5227_RS02020 (Ahae5227_02055) - 435279..436295 (-) 1017 WP_005086867.1 CorA family divalent cation transporter -
  Ahae5227_RS02025 (Ahae5227_02060) - 436469..437053 (+) 585 WP_008941208.1 TIGR00730 family Rossman fold protein -
  Ahae5227_RS02030 (Ahae5227_02065) - 437064..437471 (+) 408 WP_026056363.1 NUDIX hydrolase -
  Ahae5227_RS02035 (Ahae5227_02070) comF 437440..438099 (-) 660 WP_008941210.1 ComF family protein Machinery gene
  Ahae5227_RS02040 (Ahae5227_02075) recG 438092..440137 (-) 2046 WP_008941211.1 ATP-dependent DNA helicase RecG -
  Ahae5227_RS02045 (Ahae5227_02080) - 440156..440983 (+) 828 WP_008941212.1 NAD-dependent epimerase/dehydratase family protein -
  Ahae5227_RS02050 (Ahae5227_02085) - 441127..442107 (+) 981 WP_017396794.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25059.20 Da        Isoelectric Point: 9.6664

>NTDB_id=313164 Ahae5227_RS02035 WP_008941210.1 437440..438099(-) (comF) [Acinetobacter haemolyticus strain 5227]
MFKLLGSQTQRFLDHFTACDLCEIGAKQYFGVCKNCWDDMPWLKQTIERNQQQVFVACHYQYPINRIIQQFKYEQKLHHQ
RVLSGILQQVRLPKVQAIVPMPISTDRLVERGFNQSLLLAQGLAQTLNIPVWQPVRRLAQHSQKGLSRLERLENIEHQFI
AHPPNKIRYRKVLIVDDVITTGSSIDALSKGLRQLGCQQIYAVCLAAGGVKDSILPSVA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=313164 Ahae5227_RS02035 WP_008941210.1 437440..438099(-) (comF) [Acinetobacter haemolyticus strain 5227]
ATGTTTAAGTTACTTGGCAGTCAAACCCAACGATTCTTAGATCATTTCACTGCATGTGATTTATGTGAAATAGGAGCCAA
ACAATACTTTGGCGTATGCAAAAATTGTTGGGATGATATGCCTTGGTTAAAACAAACAATTGAACGCAATCAACAGCAGG
TCTTCGTTGCCTGCCATTATCAATATCCCATCAACCGCATTATTCAACAATTTAAATATGAGCAGAAGCTACATCACCAG
CGAGTGCTCAGTGGCATATTACAACAAGTTAGACTTCCCAAAGTTCAAGCGATTGTTCCCATGCCCATTTCAACCGATCG
CTTAGTCGAACGAGGCTTTAATCAATCTTTATTATTGGCTCAAGGCTTAGCACAAACGCTCAATATTCCAGTTTGGCAAC
CTGTTCGACGTTTAGCCCAACACTCTCAAAAAGGCTTATCCCGCCTAGAACGTTTGGAGAATATCGAGCATCAGTTTATT
GCTCATCCACCGAATAAAATCCGTTATCGCAAAGTCTTAATTGTTGATGATGTCATCACGACTGGCAGCTCGATTGATGC
ATTATCCAAAGGCTTACGCCAATTGGGCTGCCAACAGATCTATGCTGTTTGTCTTGCTGCTGGCGGGGTTAAGGACTCAA
TCCTGCCATCTGTTGCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(116-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0VNG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

66.029

95.434

0.63
  comF Acinetobacter baumannii D1279779

65.55

95.434

0.626

Multiple sequence alignment