Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   Ahae5227_RS01670 Genome accession   NZ_CP031988
Coordinates   363866..364345 (+) Length   159 a.a.
NCBI ID   WP_026057290.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain 5227     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 358866..369345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ahae5227_RS01660 (Ahae5227_01680) pilX 358878..359612 (+) 735 WP_004641259.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Ahae5227_RS01665 (Ahae5227_01685) - 359626..363882 (+) 4257 WP_008941161.1 PilC/PilY family type IV pilus protein -
  Ahae5227_RS01670 (Ahae5227_01690) comE 363866..364345 (+) 480 WP_026057290.1 type IV pilin protein Machinery gene
  Ahae5227_RS01675 (Ahae5227_01695) rpsP 364511..364768 (+) 258 WP_004641253.1 30S ribosomal protein S16 -
  Ahae5227_RS01680 (Ahae5227_01700) rimM 364787..365335 (+) 549 WP_004641251.1 ribosome maturation factor RimM -
  Ahae5227_RS01685 (Ahae5227_01705) trmD 365381..366121 (+) 741 WP_004641249.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  Ahae5227_RS01690 (Ahae5227_01710) rplS 366256..366627 (+) 372 WP_004641247.1 50S ribosomal protein L19 -
  Ahae5227_RS01695 (Ahae5227_01715) - 366690..367664 (-) 975 WP_008941167.1 esterase/lipase family protein -
  Ahae5227_RS01700 (Ahae5227_01720) - 367769..368815 (-) 1047 WP_115736349.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17811.63 Da        Isoelectric Point: 9.4060

>NTDB_id=313163 Ahae5227_RS01670 WP_026057290.1 363866..364345(+) (comE) [Acinetobacter haemolyticus strain 5227]
MKVMNRRSGFTLIELMITVAIIAILAVIAIPSYDIYIRKADLSTAQQEMHKIAALLEQHRTRNFSYEGFILRDPVRNEGP
YADVDNATKTMLLLPLNASSGKQKFTLILTVDSQTWSLKAESQNPRNYSLLMTSTGLKCKTKTPANITNQSCGLASEEW

Nucleotide


Download         Length: 480 bp        

>NTDB_id=313163 Ahae5227_RS01670 WP_026057290.1 363866..364345(+) (comE) [Acinetobacter haemolyticus strain 5227]
ATGAAAGTAATGAATAGGCGATCTGGATTTACTCTGATTGAGCTGATGATCACAGTGGCGATCATTGCTATCCTAGCAGT
GATCGCCATCCCGAGTTATGACATTTATATTCGTAAAGCAGACTTATCAACAGCTCAACAAGAGATGCATAAAATTGCTG
CATTATTAGAACAACATCGAACGCGTAACTTCAGTTATGAGGGATTTATATTAAGAGATCCTGTGCGCAATGAAGGACCC
TATGCAGATGTGGATAATGCAACCAAAACCATGTTGCTTTTACCTTTAAATGCATCGAGTGGTAAGCAAAAATTTACCTT
GATTTTAACGGTTGATTCACAGACTTGGTCACTTAAGGCTGAAAGCCAAAATCCACGTAATTACTCCTTACTTATGACCA
GCACTGGTCTAAAATGTAAGACCAAAACACCTGCCAATATCACCAATCAAAGTTGTGGTTTAGCTTCAGAAGAGTGGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(31-126)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

45.93

100

0.497

Multiple sequence alignment