Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   Ahae5227_RS01660 Genome accession   NZ_CP031988
Coordinates   358878..359612 (+) Length   244 a.a.
NCBI ID   WP_004641259.1    Uniprot ID   N9FBJ4
Organism   Acinetobacter haemolyticus strain 5227     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353878..364612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ahae5227_RS01635 (Ahae5227_01655) comE 355438..355935 (+) 498 WP_004641267.1 type IV pilin protein Machinery gene
  Ahae5227_RS01640 (Ahae5227_01660) - 355929..356387 (+) 459 WP_004641266.1 type IV pilin protein -
  Ahae5227_RS01645 (Ahae5227_01665) - 356662..357258 (+) 597 WP_115736348.1 Tfp pilus assembly protein FimT/FimU -
  Ahae5227_RS01650 (Ahae5227_01670) pilV 357255..357743 (+) 489 WP_004641261.1 type IV pilus modification protein PilV Machinery gene
  Ahae5227_RS01655 (Ahae5227_01675) - 357745..358875 (+) 1131 WP_080591904.1 PilW family protein -
  Ahae5227_RS01660 (Ahae5227_01680) pilX 358878..359612 (+) 735 WP_004641259.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Ahae5227_RS01665 (Ahae5227_01685) - 359626..363882 (+) 4257 WP_008941161.1 PilC/PilY family type IV pilus protein -
  Ahae5227_RS01670 (Ahae5227_01690) comE 363866..364345 (+) 480 WP_026057290.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26768.39 Da        Isoelectric Point: 6.0988

>NTDB_id=313162 Ahae5227_RS01660 WP_004641259.1 358878..359612(+) (pilX) [Acinetobacter haemolyticus strain 5227]
MMHNQKGSTLIIVLMIVLLITIIGTLAIRQSVSSLKLVSNNQMQTLLLQNSDAALMAFQNPAFQQHIAATNGIVGFFKNE
NNRDAELVMCFEGTEPFQLSNASYRLNSTSFVNMATGSGACHKDSVSSGRSAVVTQVYIKRETEQVTVPFADLARGTESL
GAKTENNIRLRVYVISVMKGLLSDPNKTLFTDSTDPKQGCLTKSIDHDGDNQVANCLKSNEENPLYNMQVAEYRFLSDFE
PSGS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=313162 Ahae5227_RS01660 WP_004641259.1 358878..359612(+) (pilX) [Acinetobacter haemolyticus strain 5227]
ATGATGCATAATCAAAAAGGTTCAACACTCATTATCGTACTCATGATAGTGCTGTTGATCACGATCATTGGAACGCTTGC
TATTCGCCAAAGTGTGAGTTCATTAAAGTTGGTGAGTAACAATCAGATGCAAACATTGTTGTTACAAAATTCTGATGCAG
CATTAATGGCTTTCCAAAATCCTGCATTTCAGCAACATATTGCTGCAACAAATGGCATTGTTGGTTTCTTTAAGAATGAA
AACAACAGAGATGCTGAATTGGTGATGTGCTTTGAGGGCACTGAACCCTTTCAATTGAGTAATGCAAGCTATCGTTTAAA
CAGCACCTCTTTTGTAAATATGGCAACGGGGAGTGGAGCTTGCCATAAAGATTCAGTATCGAGTGGTCGTTCTGCTGTTG
TGACACAGGTATACATTAAACGCGAGACAGAACAGGTGACTGTGCCATTTGCTGATTTAGCACGCGGTACTGAAAGTCTA
GGTGCAAAAACTGAAAATAATATCCGTTTACGTGTTTACGTTATTTCAGTAATGAAAGGCTTACTTTCTGATCCTAATAA
AACATTGTTTACAGATAGTACGGATCCTAAACAAGGTTGTTTGACTAAAAGTATTGATCACGATGGCGACAATCAGGTAG
CCAATTGTTTAAAAAGTAATGAAGAAAACCCTTTGTATAATATGCAAGTAGCGGAATATCGCTTCTTATCTGACTTTGAA
CCTTCAGGTTCATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9FBJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baylyi ADP1

49.378

98.77

0.488

Multiple sequence alignment