Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AhaeAN3_RS01560 Genome accession   NZ_CP031984
Coordinates   330127..330861 (+) Length   244 a.a.
NCBI ID   WP_004641259.1    Uniprot ID   N9FBJ4
Organism   Acinetobacter haemolyticus strain AN3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 325127..335861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AhaeAN3_RS01535 (AhaeAN3_01565) comE 326687..327184 (+) 498 WP_004641267.1 type IV pilin protein Machinery gene
  AhaeAN3_RS01540 (AhaeAN3_01570) - 327178..327636 (+) 459 WP_004641266.1 type IV pilin protein -
  AhaeAN3_RS01545 (AhaeAN3_01575) - 327911..328507 (+) 597 WP_115736348.1 Tfp pilus assembly protein FimT/FimU -
  AhaeAN3_RS01550 (AhaeAN3_01580) pilV 328504..328992 (+) 489 WP_160126844.1 type IV pilus modification protein PilV Machinery gene
  AhaeAN3_RS01555 (AhaeAN3_01585) comB 329177..330124 (+) 948 WP_252716628.1 PilW family protein Machinery gene
  AhaeAN3_RS01560 (AhaeAN3_01590) pilX 330127..330861 (+) 735 WP_004641259.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AhaeAN3_RS01565 (AhaeAN3_01595) - 330875..331141 (+) 267 WP_160126845.1 hypothetical protein -
  AhaeAN3_RS01570 (AhaeAN3_01600) - 331120..332166 (+) 1047 Protein_302 pilus assembly protein PilY -
  AhaeAN3_RS01575 (AhaeAN3_01605) comE 332150..332629 (+) 480 WP_026057290.1 type IV pilin protein Machinery gene
  AhaeAN3_RS01580 (AhaeAN3_01610) rpsP 332795..333052 (+) 258 WP_004641253.1 30S ribosomal protein S16 -
  AhaeAN3_RS01585 (AhaeAN3_01615) rimM 333071..333619 (+) 549 WP_004641251.1 ribosome maturation factor RimM -
  AhaeAN3_RS01590 (AhaeAN3_01620) trmD 333665..334405 (+) 741 WP_004641249.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AhaeAN3_RS01595 (AhaeAN3_01625) rplS 334540..334911 (+) 372 WP_004641247.1 50S ribosomal protein L19 -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26768.39 Da        Isoelectric Point: 6.0988

>NTDB_id=313121 AhaeAN3_RS01560 WP_004641259.1 330127..330861(+) (pilX) [Acinetobacter haemolyticus strain AN3]
MMHNQKGSTLIIVLMIVLLITIIGTLAIRQSVSSLKLVSNNQMQTLLLQNSDAALMAFQNPAFQQHIAATNGIVGFFKNE
NNRDAELVMCFEGTEPFQLSNASYRLNSTSFVNMATGSGACHKDSVSSGRSAVVTQVYIKRETEQVTVPFADLARGTESL
GAKTENNIRLRVYVISVMKGLLSDPNKTLFTDSTDPKQGCLTKSIDHDGDNQVANCLKSNEENPLYNMQVAEYRFLSDFE
PSGS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=313121 AhaeAN3_RS01560 WP_004641259.1 330127..330861(+) (pilX) [Acinetobacter haemolyticus strain AN3]
ATGATGCATAATCAAAAAGGTTCAACACTCATTATCGTACTCATGATAGTGCTGTTGATCACGATCATTGGAACGCTTGC
TATTCGCCAAAGTGTGAGTTCATTAAAGTTGGTGAGTAACAATCAGATGCAAACATTGTTGTTACAAAATTCTGATGCAG
CATTAATGGCTTTCCAAAATCCTGCATTTCAGCAACATATTGCTGCAACAAATGGCATTGTTGGTTTCTTTAAGAATGAA
AACAACAGAGATGCTGAATTGGTGATGTGCTTTGAGGGCACTGAACCCTTTCAATTGAGTAATGCAAGCTATCGTTTAAA
CAGCACCTCTTTTGTAAATATGGCAACGGGGAGTGGAGCTTGCCATAAAGATTCAGTATCGAGTGGTCGTTCTGCTGTTG
TGACACAGGTATACATTAAACGCGAGACAGAACAGGTGACTGTGCCATTTGCGGATTTAGCACGCGGTACTGAAAGTCTA
GGTGCAAAAACTGAAAATAATATCCGTTTACGTGTTTACGTTATTTCAGTAATGAAAGGCTTACTTTCTGATCCTAATAA
AACATTGTTTACAGATAGTACGGATCCTAAACAAGGTTGTTTGACTAAAAGTATTGATCACGATGGCGACAATCAGGTAG
CCAATTGTTTAAAAAGTAATGAAGAAAACCCTTTGTATAATATGCAAGTAGCGGAATATCGCTTCTTATCTGACTTTGAA
CCTTCAGGTTCATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9FBJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baylyi ADP1

49.378

98.77

0.488

Multiple sequence alignment