Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   AhaeAN4_RS09505 Genome accession   NZ_CP031979
Coordinates   1929038..1929382 (-) Length   114 a.a.
NCBI ID   WP_042110486.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain AN4     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1924038..1934382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AhaeAN4_RS09475 (AhaeAN4_09540) tadA 1924254..1924766 (-) 513 WP_005080470.1 tRNA adenosine(34) deaminase TadA -
  AhaeAN4_RS09480 (AhaeAN4_09545) - 1924771..1925895 (-) 1125 WP_171055793.1 enoyl-CoA hydratase/isomerase family protein -
  AhaeAN4_RS09485 (AhaeAN4_09550) ung 1925892..1926605 (-) 714 WP_005090364.1 uracil-DNA glycosylase -
  AhaeAN4_RS09490 (AhaeAN4_09555) - 1926652..1927248 (-) 597 WP_017394547.1 6-pyruvoyl trahydropterin synthase family protein -
  AhaeAN4_RS09495 (AhaeAN4_09560) gspK 1927334..1928311 (-) 978 WP_004639300.1 type II secretion system minor pseudopilin GspK -
  AhaeAN4_RS09500 (AhaeAN4_09565) xcpW 1928313..1929032 (-) 720 WP_005080462.1 type II secretion system minor pseudopilin GspJ Machinery gene
  AhaeAN4_RS09505 (AhaeAN4_09570) xcpV 1929038..1929382 (-) 345 WP_042110486.1 type II secretion system protein Machinery gene
  AhaeAN4_RS09510 (AhaeAN4_09575) - 1929585..1930196 (-) 612 WP_005080458.1 type II secretion system protein -
  AhaeAN4_RS09515 (AhaeAN4_09580) - 1930211..1930816 (-) 606 WP_017394545.1 TetR/AcrR family transcriptional regulator -
  AhaeAN4_RS09520 (AhaeAN4_09585) - 1930858..1931631 (-) 774 WP_005080456.1 TatD family hydrolase -
  AhaeAN4_RS09525 (AhaeAN4_09590) - 1931652..1931996 (-) 345 WP_004639306.1 PilZ domain-containing protein -
  AhaeAN4_RS09530 (AhaeAN4_09595) - 1932319..1932627 (-) 309 WP_004639308.1 hypothetical protein -
  AhaeAN4_RS09535 (AhaeAN4_09600) - 1932771..1933754 (-) 984 WP_004639309.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12655.56 Da        Isoelectric Point: 6.4632

>NTDB_id=313088 AhaeAN4_RS09505 WP_042110486.1 1929038..1929382(-) (xcpV) [Acinetobacter haemolyticus strain AN4]
MVALAIFAVAAIALTKIAMQYTQATSNAILRTKAQFVAMNEVAMMEINKEWLDGTQSKQITSQGETWQIDKKAQATISPK
VQRIELQVSLFNVDQDKVEAGVGHLVFFNHQTES

Nucleotide


Download         Length: 345 bp        

>NTDB_id=313088 AhaeAN4_RS09505 WP_042110486.1 1929038..1929382(-) (xcpV) [Acinetobacter haemolyticus strain AN4]
ATGGTGGCTTTGGCAATTTTTGCAGTGGCTGCAATCGCGCTAACAAAAATAGCCATGCAATATACGCAAGCAACCTCAAA
TGCAATTTTACGTACTAAGGCTCAATTTGTTGCAATGAATGAGGTTGCAATGATGGAGATTAACAAAGAGTGGTTGGATG
GAACCCAATCCAAACAAATCACTTCACAAGGTGAAACATGGCAAATTGATAAAAAAGCACAAGCAACGATTAGCCCCAAA
GTTCAGCGGATCGAATTACAAGTGAGTTTATTTAACGTTGATCAAGACAAAGTTGAAGCGGGTGTTGGTCATCTAGTGTT
TTTCAATCATCAGACTGAAAGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(31-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

80

96.491

0.772

Multiple sequence alignment