Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AhaeAN43_RS02260 Genome accession   NZ_CP031976
Coordinates   478366..479025 (-) Length   219 a.a.
NCBI ID   WP_004641105.1    Uniprot ID   N9GSC1
Organism   Acinetobacter haemolyticus strain AN43     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 473366..484025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AhaeAN43_RS02225 (AhaeAN43_02260) - 473997..474659 (+) 663 WP_004641119.1 outer membrane lipid asymmetry maintenance protein MlaD -
  AhaeAN43_RS02230 (AhaeAN43_02265) - 474679..475311 (+) 633 WP_004641117.1 phospholipid-binding protein MlaC -
  AhaeAN43_RS02235 (AhaeAN43_02270) - 475323..475610 (+) 288 WP_005088352.1 lipid asymmetry maintenance protein MlaB -
  AhaeAN43_RS02240 (AhaeAN43_02275) - 475661..476203 (-) 543 WP_005088350.1 hypothetical protein -
  AhaeAN43_RS02245 (AhaeAN43_02280) - 476205..477221 (-) 1017 WP_005086867.1 CorA family divalent cation transporter -
  AhaeAN43_RS02250 (AhaeAN43_02285) - 477395..477979 (+) 585 WP_005088343.1 TIGR00730 family Rossman fold protein -
  AhaeAN43_RS02255 (AhaeAN43_02290) - 477990..478397 (+) 408 WP_020846335.1 NUDIX domain-containing protein -
  AhaeAN43_RS02260 (AhaeAN43_02295) comF 478366..479025 (-) 660 WP_004641105.1 ComF family protein Machinery gene
  AhaeAN43_RS02265 (AhaeAN43_02300) recG 479018..481063 (-) 2046 WP_005088339.1 ATP-dependent DNA helicase RecG -
  AhaeAN43_RS02270 (AhaeAN43_02305) - 481082..481909 (+) 828 WP_005086857.1 NAD-dependent epimerase/dehydratase family protein -
  AhaeAN43_RS02275 (AhaeAN43_02310) - 482053..483033 (+) 981 WP_026070362.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25089.23 Da        Isoelectric Point: 9.6664

>NTDB_id=313039 AhaeAN43_RS02260 WP_004641105.1 478366..479025(-) (comF) [Acinetobacter haemolyticus strain AN43]
MFKLLGSQTQRFLDHFTACDLCEIGAKQYFGVCKNCWDDMPWLKQTIERNQQQVFVACHYQYPINRIIQQFKYEQKLHHQ
RVLSGILQQVRLPKVQAIVPMPISTDRLVERGFNQSLLLAQGLAQTLNIPVWQPVRRLAQHSQKGLSRLERLENIEHQFI
AHPPNKIRYRKVLIVDDVITTGSSIDALSKSLRQLGCQQIYAVCLAAGGVKDSILPSVA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=313039 AhaeAN43_RS02260 WP_004641105.1 478366..479025(-) (comF) [Acinetobacter haemolyticus strain AN43]
ATGTTTAAGTTACTTGGCAGTCAAACCCAACGATTCTTAGATCATTTCACTGCATGTGATTTATGTGAAATAGGAGCCAA
ACAATACTTTGGCGTATGCAAAAATTGTTGGGATGATATGCCTTGGTTAAAACAAACAATTGAACGCAATCAACAGCAGG
TCTTCGTTGCCTGCCATTATCAATATCCCATCAACCGAATTATTCAACAATTTAAATATGAGCAGAAGCTACATCACCAG
CGAGTGCTCAGTGGCATATTACAACAAGTTAGACTTCCCAAAGTTCAAGCGATTGTTCCCATGCCCATTTCAACCGATCG
CTTAGTCGAACGAGGCTTTAATCAATCTTTATTATTGGCTCAAGGCTTAGCACAAACGCTCAATATTCCAGTTTGGCAAC
CTGTTCGACGTTTAGCCCAACACTCTCAAAAAGGCTTATCCCGTCTAGAACGTTTGGAGAATATCGAGCATCAGTTTATT
GCTCATCCACCGAATAAAATCCGTTATCGCAAAGTCTTAATTGTTGATGATGTCATCACGACTGGCAGCTCGATTGATGC
ATTATCCAAAAGCTTACGCCAATTGGGCTGCCAACAGATCTATGCTGTTTGTCTTGCTGCTGGTGGGGTTAAGGACTCAA
TCCTGCCATCTGTTGCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(116-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9GSC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

66.029

95.434

0.63
  comF Acinetobacter baumannii D1279779

65.55

95.434

0.626

Multiple sequence alignment