Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AhaeAN59_RS02265 Genome accession   NZ_CP031972
Coordinates   479480..480139 (-) Length   219 a.a.
NCBI ID   WP_004641105.1    Uniprot ID   N9GSC1
Organism   Acinetobacter haemolyticus strain AN59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 474480..485139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AhaeAN59_RS02230 (AhaeAN59_02270) - 475111..475773 (+) 663 WP_004641119.1 outer membrane lipid asymmetry maintenance protein MlaD -
  AhaeAN59_RS02235 (AhaeAN59_02275) - 475793..476425 (+) 633 WP_004641117.1 phospholipid-binding protein MlaC -
  AhaeAN59_RS02240 (AhaeAN59_02280) - 476437..476724 (+) 288 WP_005088352.1 lipid asymmetry maintenance protein MlaB -
  AhaeAN59_RS02245 (AhaeAN59_02285) - 476775..477317 (-) 543 WP_005088350.1 hypothetical protein -
  AhaeAN59_RS02250 (AhaeAN59_02290) - 477319..478335 (-) 1017 WP_005086867.1 CorA family divalent cation transporter -
  AhaeAN59_RS02255 (AhaeAN59_02295) - 478509..479093 (+) 585 WP_005088343.1 TIGR00730 family Rossman fold protein -
  AhaeAN59_RS02260 (AhaeAN59_02300) - 479104..479511 (+) 408 WP_020846335.1 NUDIX hydrolase -
  AhaeAN59_RS02265 (AhaeAN59_02305) comF 479480..480139 (-) 660 WP_004641105.1 ComF family protein Machinery gene
  AhaeAN59_RS02270 (AhaeAN59_02310) recG 480132..482177 (-) 2046 WP_005088339.1 ATP-dependent DNA helicase RecG -
  AhaeAN59_RS02275 (AhaeAN59_02315) - 482196..483023 (+) 828 WP_005086857.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25089.23 Da        Isoelectric Point: 9.6664

>NTDB_id=313001 AhaeAN59_RS02265 WP_004641105.1 479480..480139(-) (comF) [Acinetobacter haemolyticus strain AN59]
MFKLLGSQTQRFLDHFTACDLCEIGAKQYFGVCKNCWDDMPWLKQTIERNQQQVFVACHYQYPINRIIQQFKYEQKLHHQ
RVLSGILQQVRLPKVQAIVPMPISTDRLVERGFNQSLLLAQGLAQTLNIPVWQPVRRLAQHSQKGLSRLERLENIEHQFI
AHPPNKIRYRKVLIVDDVITTGSSIDALSKSLRQLGCQQIYAVCLAAGGVKDSILPSVA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=313001 AhaeAN59_RS02265 WP_004641105.1 479480..480139(-) (comF) [Acinetobacter haemolyticus strain AN59]
ATGTTTAAGTTACTTGGCAGTCAAACCCAACGATTCTTAGATCATTTCACTGCATGTGATTTATGTGAAATAGGAGCCAA
ACAATACTTTGGCGTATGCAAAAATTGTTGGGATGATATGCCTTGGTTAAAACAAACAATTGAACGCAATCAACAGCAGG
TCTTCGTTGCCTGCCATTATCAATATCCCATCAACCGAATTATTCAACAATTTAAATATGAGCAGAAGCTACATCACCAG
CGAGTGCTCAGTGGCATATTACAACAAGTTAGACTTCCCAAAGTTCAAGCGATTGTTCCCATGCCCATTTCAACCGATCG
CTTAGTCGAACGAGGCTTTAATCAATCTTTATTATTGGCTCAAGGCTTAGCACAAACGCTCAATATTCCAGTTTGGCAAC
CTGTTCGACGTTTAGCCCAACACTCTCAAAAAGGCTTATCCCGTCTAGAACGTTTGGAGAATATCGAGCATCAGTTTATT
GCTCATCCACCGAATAAAATCCGTTATCGCAAAGTCTTAATTGTTGATGATGTCATCACGACTGGCAGCTCGATTGATGC
ATTATCCAAAAGCTTACGCCAATTGGGCTGCCAACAGATCTATGCTGTTTGTCTTGCTGCTGGTGGGGTTAAGGACTCAA
TCCTGCCATCTGTTGCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(116-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9GSC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

66.029

95.434

0.63
  comF Acinetobacter baumannii D1279779

65.55

95.434

0.626

Multiple sequence alignment