Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NGK_RS10660 Genome accession   NC_011035
Coordinates   1959844..1960239 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae NCCP11945     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1954844..1965239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGK_RS16105 - 1959623..1959739 (+) 117 Protein_2001 competence protein ComE -
  NGK_RS10660 comE 1959844..1960239 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  NGK_RS10670 (NGK_2356) - 1960764..1961093 (-) 330 Protein_2003 transposase -
  NGK_RS10675 (NGK_2357) dnaJ 1961227..1962348 (+) 1122 WP_003690173.1 molecular chaperone DnaJ -
  NGK_RS10680 (NGK_2359) - 1962543..1964561 (+) 2019 WP_012504030.1 OPT family oligopeptide transporter -
  NGK_RS10685 (NGK_2360) rfbC 1964605..1965162 (-) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=31249 NGK_RS10660 WP_003703428.1 1959844..1960239(+) (comE) [Neisseria gonorrhoeae NCCP11945]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=31249 NGK_RS10660 WP_003703428.1 1959844..1960239(+) (comE) [Neisseria gonorrhoeae NCCP11945]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment