Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D1E88_RS10660 Genome accession   NZ_CP031886
Coordinates   2106591..2106986 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CFSAN082783     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2101591..2111986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1E88_RS10635 (D1E88_10845) thiE 2102203..2102830 (-) 628 Protein_2025 thiamine phosphate synthase -
  D1E88_RS10640 (D1E88_10850) thiM 2102832..2103623 (-) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  D1E88_RS10645 (D1E88_10855) thiD 2103607..2104437 (-) 831 WP_000594950.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  D1E88_RS10650 (D1E88_10860) tenA 2104430..2105119 (-) 690 WP_000396063.1 thiaminase II -
  D1E88_RS10655 (D1E88_10865) sceD 2105507..2106202 (-) 696 WP_000752011.1 lytic transglycosylase SceD -
  D1E88_RS10660 (D1E88_10870) ssb 2106591..2106986 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  D1E88_RS10665 (D1E88_10875) - 2107180..2107620 (+) 441 WP_000846751.1 YwpF-like family protein -
  D1E88_RS10670 (D1E88_10880) fabZ 2107676..2108116 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  D1E88_RS10675 (D1E88_10885) murA 2108150..2109415 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  D1E88_RS10680 (D1E88_10890) - 2109526..2109759 (-) 234 WP_000384523.1 DUF1146 family protein -
  D1E88_RS10695 (D1E88_10900) - 2110356..2110760 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=312428 D1E88_RS10660 WP_000932694.1 2106591..2106986(-) (ssb) [Staphylococcus aureus strain CFSAN082783]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=312428 D1E88_RS10660 WP_000932694.1 2106591..2106986(-) (ssb) [Staphylococcus aureus strain CFSAN082783]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment