Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   D1E88_RS05790 Genome accession   NZ_CP031886
Coordinates   1184182..1185054 (+) Length   290 a.a.
NCBI ID   WP_000620185.1    Uniprot ID   A0A0U1MIZ2
Organism   Staphylococcus aureus strain CFSAN082783     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1179182..1190054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1E88_RS05770 (D1E88_05910) sucC 1179295..1180461 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  D1E88_RS05775 (D1E88_05915) sucD 1180483..1181391 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  D1E88_RS05780 (D1E88_05920) - 1181620..1182738 (+) 1119 WP_001041653.1 LysM peptidoglycan-binding domain-containing protein -
  D1E88_RS05785 (D1E88_05925) fmhC 1182766..1184010 (+) 1245 WP_000672866.1 FemA/FemB family glycyltransferase FmhC -
  D1E88_RS05790 (D1E88_05930) dprA 1184182..1185054 (+) 873 WP_000620185.1 DNA-processing protein DprA Machinery gene
  D1E88_RS05795 (D1E88_05935) topA 1185228..1187303 (+) 2076 WP_001622395.1 type I DNA topoisomerase -
  D1E88_RS05800 (D1E88_05940) trmFO 1187459..1188766 (+) 1308 WP_000195251.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33533.98 Da        Isoelectric Point: 9.6905

>NTDB_id=312402 D1E88_RS05790 WP_000620185.1 1184182..1185054(+) (dprA) [Staphylococcus aureus strain CFSAN082783]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLNHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=312402 D1E88_RS05790 WP_000620185.1 1184182..1185054(+) (dprA) [Staphylococcus aureus strain CFSAN082783]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTAATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGAAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACGCATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.621

100

0.986
  dprA Staphylococcus aureus N315

98.276

100

0.983

Multiple sequence alignment