Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   NGK_RS08215 Genome accession   NC_011035
Coordinates   1530728..1531372 (-) Length   214 a.a.
NCBI ID   WP_003698856.1    Uniprot ID   A0AA44U6I4
Organism   Neisseria gonorrhoeae NCCP11945     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1525728..1536372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGK_RS08180 (NGK_1833) ftsL 1526209..1526472 (-) 264 WP_003701583.1 cell division protein FtsL -
  NGK_RS08185 (NGK_1834) rsmH 1526499..1527455 (-) 957 WP_003689462.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  NGK_RS08190 (NGK_1835) mraZ 1527452..1527907 (-) 456 WP_003689463.1 division/cell wall cluster transcriptional repressor MraZ -
  NGK_RS08195 (NGK_1836) - 1528186..1529433 (+) 1248 WP_010951292.1 class I SAM-dependent methyltransferase -
  NGK_RS08210 (NGK_1837) - 1529874..1530695 (-) 822 WP_003703069.1 undecaprenyl-diphosphate phosphatase -
  NGK_RS08215 (NGK_1838) dsbA1 1530728..1531372 (-) 645 WP_003698856.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  NGK_RS08220 (NGK_1839) ftsN 1531375..1532238 (-) 864 WP_172616882.1 cell division protein FtsN -
  NGK_RS08225 (NGK_1840) comM 1532344..1533840 (-) 1497 WP_012503875.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NGK_RS08230 (NGK_1842) - 1533854..1534174 (-) 321 WP_002216505.1 accessory factor UbiK family protein -
  NGK_RS08240 (NGK_1844) putP 1534662..1536188 (+) 1527 WP_003689473.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23973.05 Da        Isoelectric Point: 9.9225

>NTDB_id=31236 NGK_RS08215 WP_003698856.1 1530728..1531372(-) (dsbA1) [Neisseria gonorrhoeae NCCP11945]
MKFKHLLPLLLSAVLSAQAYALTEGEDYLVLDKPIPQEQPGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDTYLRTEH
VVWRPEMLGLARMAAAVKLSGLKYQANSAVFKAVYEQKIRLENRAVAGKWALSQKGFDGKKLMRAYDSPEAAAVALKMQK
LTEQYGIDGTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQTPAVQK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=31236 NGK_RS08215 WP_003698856.1 1530728..1531372(-) (dsbA1) [Neisseria gonorrhoeae NCCP11945]
ATGAAGTTTAAACATCTGTTGCCGCTGCTGCTGTCGGCAGTGTTGTCCGCGCAGGCATATGCCCTGACGGAAGGGGAAGA
CTATCTTGTGTTGGATAAACCCATTCCTCAAGAACAGCCGGGAAAAATTGAGGTTTTGGAATTTTTCGGCTATTTTTGCG
TACATTGCCATCATTTCGATCCTTTGTTATTGAAACTGGGCAAGGCATTGCCGTCTGATACTTATCTGCGGACGGAGCAC
GTGGTCTGGCGGCCTGAAATGCTCGGTCTGGCAAGAATGGCTGCTGCGGTCAAGCTGTCGGGTTTGAAATATCAGGCAAA
CTCTGCTGTGTTTAAAGCAGTTTACGAACAAAAAATCCGTTTGGAAAACAGGGCTGTTGCCGGAAAATGGGCTTTATCTC
AAAAAGGTTTTGACGGCAAAAAACTGATGCGCGCCTATGATTCCCCCGAAGCTGCCGCCGTCGCATTAAAAATGCAGAAA
CTGACGGAACAATACGGTATTGACGGCACGCCGACCGTTATTGTCGGCGGAAAATACCGCGTTATCTTCAATAATGGCTT
TGATGGCGGCGTTCATACGATTAAAGAATTGGTTGCCAAAGTCAGGGAAGAACGCAAGCGTCAGACCCCTGCTGTACAGA
AATAG

Domains

Predicted by InterproScan.

DSBA-like thioredoxin domain (DSBA)

(86-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

57.754

87.383

0.505
  dsbA2 Neisseria meningitidis MC58

53.226

86.916

0.463

Multiple sequence alignment