Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NGK_RS08025 Genome accession   NC_011035
Coordinates   1489846..1490277 (+) Length   143 a.a.
NCBI ID   WP_082300781.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae NCCP11945     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1484846..1495277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGK_RS08000 (NGK_1791) recO 1485521..1486264 (-) 744 WP_003695555.1 DNA repair protein RecO -
  NGK_RS08005 (NGK_1792) pheA 1486301..1487428 (-) 1128 WP_003689394.1 prephenate dehydratase -
  NGK_RS08010 (NGK_1793) - 1487469..1488694 (-) 1226 Protein_1503 multidrug effflux MFS transporter -
  NGK_RS08020 (NGK_1795) - 1488810..1489685 (-) 876 WP_003693582.1 DMT family transporter -
  NGK_RS08025 (NGK_1796) pilE 1489846..1490277 (+) 432 WP_082300781.1 pilin Machinery gene
  NGK_RS08030 (NGK_1799) - 1490822..1491649 (+) 828 WP_082300779.1 opacity family porin -
  NGK_RS15490 - 1491663..1491809 (+) 147 WP_187146765.1 hypothetical protein -
  NGK_RS08035 (NGK_1800) - 1491930..1492742 (-) 813 WP_003689398.1 carbon-nitrogen hydrolase family protein -
  NGK_RS08040 (NGK_1801) - 1492827..1493699 (+) 873 WP_003693577.1 prephenate dehydrogenase -
  NGK_RS08045 (NGK_1802) - 1493757..1494911 (-) 1155 WP_010358927.1 NnrS family protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15444.23 Da        Isoelectric Point: 9.0163

>NTDB_id=31234 NGK_RS08025 WP_082300781.1 1489846..1490277(+) (pilE) [Neisseria gonorrhoeae NCCP11945]
MFQGPDSRPRGNDEAILLAEGQKSAVTEYYLNHGKWPENNGNAGVASPADIKGKYVESVTVAKGVVTAQMKSDGVNKEIK
GKKLSLWARRQDGSVKWFCGQPVKRDDKAAKDGTDAVTADADANGKIDTKHLPSTCRDKHSDT

Nucleotide


Download         Length: 432 bp        

>NTDB_id=31234 NGK_RS08025 WP_082300781.1 1489846..1490277(+) (pilE) [Neisseria gonorrhoeae NCCP11945]
TTGTTCCAAGGTCCGGACTCCCGCCCGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTAATGCCGGCGTGGCATCCCCCGCCGACATCAAAGGCA
AATATGTTGAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAATGAAATCAGACGGCGTAAACAAAGAAATCAAA
GGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACGA
CAAAGCCGCCAAAGACGGCACCGACGCCGTCACCGCCGACGCCGACGCCAACGGCAAAATCGACACCAAGCACCTGCCGT
CAACCTGCCGCGATAAACACTCTGACACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.846

90.909

0.671
  pilE Neisseria gonorrhoeae MS11

73.846

90.909

0.671

Multiple sequence alignment