Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   D1096_RS07105 Genome accession   NZ_CP031874
Coordinates   1564989..1565333 (+) Length   114 a.a.
NCBI ID   WP_012263215.1    Uniprot ID   B0BR00
Organism   Actinobacillus pleuropneumoniae strain S1421     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1559989..1570333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1096_RS07080 (D1096_07130) rpsL 1560122..1560496 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  D1096_RS07085 (D1096_07135) rfaC 1560618..1561577 (-) 960 WP_012263212.1 lipopolysaccharide heptosyltransferase RfaC -
  D1096_RS07090 (D1096_07140) waaF 1561652..1562689 (-) 1038 WP_012263213.1 lipopolysaccharide heptosyltransferase II -
  D1096_RS07095 (D1096_07145) - 1562771..1563175 (-) 405 WP_005599908.1 MliC family protein -
  D1096_RS07100 (D1096_07150) - 1563297..1564688 (-) 1392 WP_005605242.1 LysM-like peptidoglycan-binding domain-containing protein -
  D1096_RS07105 (D1096_07155) comEA/comE1 1564989..1565333 (+) 345 WP_012263215.1 ComEA family DNA-binding protein Machinery gene
  D1096_RS07110 (D1096_07160) asd 1565484..1566374 (+) 891 WP_005602033.1 archaetidylserine decarboxylase -
  D1096_RS07115 (D1096_07165) hsdR 1566491..1568833 (+) 2343 WP_012263216.1 EcoAI/FtnUII family type I restriction enzme subunit R -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12460.33 Da        Isoelectric Point: 10.2030

>NTDB_id=312269 D1096_RS07105 WP_012263215.1 1564989..1565333(+) (comEA/comE1) [Actinobacillus pleuropneumoniae strain S1421]
MKKFARFSISFIIALLSADSIAKPNNPPVSEPTPIVQQMTTTNKTADKQNQVNINTADAAEIKSKLVGIGEKKAQAIVDY
RTKNGAFITIEQLTEVSGIGKATLEKNRERITLE

Nucleotide


Download         Length: 345 bp        

>NTDB_id=312269 D1096_RS07105 WP_012263215.1 1564989..1565333(+) (comEA/comE1) [Actinobacillus pleuropneumoniae strain S1421]
ATGAAAAAATTTGCCCGATTTAGTATTAGCTTCATCATTGCATTGTTATCCGCCGATTCAATCGCAAAGCCTAATAATCC
GCCCGTTTCCGAACCGACTCCCATAGTTCAACAAATGACAACAACGAACAAAACTGCCGATAAACAAAATCAAGTGAATA
TCAATACGGCGGATGCAGCGGAAATTAAATCCAAACTGGTGGGAATCGGTGAGAAAAAAGCACAAGCGATTGTCGATTAC
CGCACTAAAAACGGTGCTTTTATTACGATAGAACAACTAACGGAAGTCTCCGGAATCGGTAAAGCGACACTAGAGAAAAA
TCGCGAACGCATCACGTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(48-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0BR00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

57.391

100

0.579
  comE1/comEA Haemophilus influenzae Rd KW20

46.154

91.228

0.421

Multiple sequence alignment