Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   D1097_RS07550 Genome accession   NZ_CP031873
Coordinates   1621650..1621994 (+) Length   114 a.a.
NCBI ID   WP_005605243.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae serovar 4 str. M62     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1616650..1626994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1097_RS07525 (D1097_07545) rpsL 1616782..1617156 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  D1097_RS07530 (D1097_07550) rfaC 1617278..1618237 (-) 960 WP_043990959.1 lipopolysaccharide heptosyltransferase RfaC -
  D1097_RS07535 (D1097_07555) waaF 1618313..1619350 (-) 1038 WP_043990957.1 lipopolysaccharide heptosyltransferase II -
  D1097_RS07540 (D1097_07560) - 1619432..1619836 (-) 405 WP_005599908.1 MliC family protein -
  D1097_RS07545 (D1097_07565) - 1619958..1621349 (-) 1392 WP_005605242.1 LysM-like peptidoglycan-binding domain-containing protein -
  D1097_RS07550 (D1097_07570) comEA/comE1 1621650..1621994 (+) 345 WP_005605243.1 ComEA family DNA-binding protein Machinery gene
  D1097_RS07555 (D1097_07575) asd 1622145..1623035 (+) 891 WP_005602033.1 archaetidylserine decarboxylase -
  D1097_RS07560 (D1097_07580) hsdR 1623152..1625515 (+) 2364 WP_005605244.1 EcoAI/FtnUII family type I restriction enzme subunit R -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12476.33 Da        Isoelectric Point: 10.2030

>NTDB_id=312242 D1097_RS07550 WP_005605243.1 1621650..1621994(+) (comEA/comE1) [Actinobacillus pleuropneumoniae serovar 4 str. M62]
MKKFARFSISFIIALLSADSIAKPNNPPVSEPTPVVQQMTTTNKTADKQNQVNINTADAAEIKSKLVGIGEKKAQAIVDY
RTKNGAFITIEQLTEVSGIGKTTLEKNRERITLE

Nucleotide


Download         Length: 345 bp        

>NTDB_id=312242 D1097_RS07550 WP_005605243.1 1621650..1621994(+) (comEA/comE1) [Actinobacillus pleuropneumoniae serovar 4 str. M62]
ATGAAAAAATTTGCCCGATTTAGTATTAGCTTCATCATTGCATTGTTATCCGCCGATTCAATCGCAAAGCCTAATAATCC
GCCCGTTTCCGAACCGACTCCCGTAGTTCAACAAATGACAACAACGAACAAAACTGCCGATAAACAAAATCAAGTGAATA
TCAATACGGCGGATGCAGCGGAAATTAAATCCAAACTAGTGGGAATCGGTGAGAAAAAAGCACAAGCGATTGTCGATTAC
CGCACTAAAAACGGTGCTTTTATTACGATAGAACAACTAACGGAAGTCTCCGGAATCGGTAAAACGACACTAGAGAAAAA
TCGCGAACGCATCACGTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(48-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

57.391

100

0.579
  comE1/comEA Haemophilus influenzae Rd KW20

46.154

91.228

0.421

Multiple sequence alignment