Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   D1100_RS09790 Genome accession   NZ_CP031869
Coordinates   2059667..2060011 (-) Length   114 a.a.
NCBI ID   WP_005599904.1    Uniprot ID   A3N254
Organism   Actinobacillus pleuropneumoniae strain WF83     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2054667..2065011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1100_RS09780 (D1100_09845) hsdR 2056146..2058509 (-) 2364 WP_005617883.1 EcoAI/FtnUII family type I restriction enzme subunit R -
  D1100_RS09785 (D1100_09850) asd 2058626..2059516 (-) 891 WP_005602033.1 archaetidylserine decarboxylase -
  D1100_RS09790 (D1100_09855) comEA/comE1 2059667..2060011 (-) 345 WP_005599904.1 ComEA family DNA-binding protein Machinery gene
  D1100_RS09795 (D1100_09860) - 2060312..2061703 (+) 1392 WP_005617881.1 LysM-like peptidoglycan-binding domain-containing protein -
  D1100_RS09800 (D1100_09865) - 2061825..2062229 (+) 405 WP_005599908.1 MliC family protein -
  D1100_RS09805 (D1100_09870) waaF 2062311..2063348 (+) 1038 WP_005619838.1 lipopolysaccharide heptosyltransferase II -
  D1100_RS09810 (D1100_09875) rfaC 2063423..2064382 (+) 960 WP_012478545.1 lipopolysaccharide heptosyltransferase RfaC -
  D1100_RS09815 (D1100_09880) rpsL 2064504..2064878 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12446.30 Da        Isoelectric Point: 10.2030

>NTDB_id=312223 D1100_RS09790 WP_005599904.1 2059667..2060011(-) (comEA/comE1) [Actinobacillus pleuropneumoniae strain WF83]
MKKFARFSISFIIALLSADSIAKPNNPPVSEPTPVVQQMTTTNKTADKQNQVNINTADAAEIKSKLVGIGEKKAQAIVDY
RTKNGAFITIEQLTEVSGIGKATLEKNRERITLE

Nucleotide


Download         Length: 345 bp        

>NTDB_id=312223 D1100_RS09790 WP_005599904.1 2059667..2060011(-) (comEA/comE1) [Actinobacillus pleuropneumoniae strain WF83]
ATGAAAAAATTTGCCCGATTTAGTATTAGCTTCATCATTGCATTGTTATCCGCCGATTCAATCGCAAAGCCTAATAATCC
GCCCGTTTCCGAACCGACTCCCGTAGTTCAACAAATGACAACAACGAACAAAACTGCCGATAAACAAAATCAAGTGAATA
TCAATACGGCGGATGCAGCGGAAATTAAATCCAAACTGGTGGGAATCGGTGAGAAAAAAGCACAAGCGATTGTCGATTAC
CGCACTAAAAACGGTGCTTTTATTACGATAGAACAACTAACGGAAGTCTCCGGAATCGGTAAAGCGACACTAGAGAAAAA
TCGCGAACGCATCACGTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(48-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N254

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

58.261

100

0.588
  comE1/comEA Haemophilus influenzae Rd KW20

47.115

91.228

0.43

Multiple sequence alignment