Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | D1100_RS06770 | Genome accession | NZ_CP031869 |
| Coordinates | 1479990..1480538 (-) | Length | 182 a.a. |
| NCBI ID | WP_005617759.1 | Uniprot ID | B3H245 |
| Organism | Actinobacillus pleuropneumoniae strain WF83 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1474990..1485538
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1100_RS06755 (D1100_06800) | - | 1475474..1475995 (+) | 522 | WP_005598290.1 | SprT family zinc-dependent metalloprotease | - |
| D1100_RS06760 (D1100_06805) | - | 1476100..1477386 (+) | 1287 | WP_005617755.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| D1100_RS06765 (D1100_06810) | - | 1477576..1479915 (-) | 2340 | WP_005617757.1 | Tex family protein | - |
| D1100_RS06770 (D1100_06815) | pilF | 1479990..1480538 (-) | 549 | WP_005617759.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| D1100_RS06775 (D1100_06820) | - | 1480592..1481773 (-) | 1182 | WP_005608495.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| D1100_RS06800 (D1100_06845) | gltX | 1482678..1484117 (+) | 1440 | WP_005605060.1 | glutamate--tRNA ligase | - |
| D1100_RS06810 (D1100_06855) | yefM | 1484455..1484706 (+) | 252 | WP_017357689.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| D1100_RS06815 (D1100_06860) | - | 1484703..1484963 (+) | 261 | WP_017357690.1 | Txe/YoeB family addiction module toxin | - |
| D1100_RS06820 (D1100_06865) | - | 1485122..1485289 (-) | 168 | WP_005598320.1 | Trm112 family protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20645.27 Da Isoelectric Point: 6.9479
>NTDB_id=312212 D1100_RS06770 WP_005617759.1 1479990..1480538(-) (pilF) [Actinobacillus pleuropneumoniae strain WF83]
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKSSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKSRAAALR
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKSSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKSRAAALR
Nucleotide
Download Length: 549 bp
>NTDB_id=312212 D1100_RS06770 WP_005617759.1 1479990..1480538(-) (pilF) [Actinobacillus pleuropneumoniae strain WF83]
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTGTTCGGTTGTTCTTCTCAGCTTCC
TACCTCTCAAACCACGTTTAATCGCTCGGAAGCGGTTAAAGCGCGTATCAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCATGATCAAAACGACTACTTACCTCACTCCGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATCAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATCGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAATCAAGAGCGGCGGCACTACGCTAG
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTGTTCGGTTGTTCTTCTCAGCTTCC
TACCTCTCAAACCACGTTTAATCGCTCGGAAGCGGTTAAAGCGCGTATCAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCATGATCAAAACGACTACTTACCTCACTCCGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATCAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATCGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAATCAAGAGCGGCGGCACTACGCTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
66.489 |
100 |
0.687 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
46.199 |
93.956 |
0.434 |