Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   D1101_RS07600 Genome accession   NZ_CP031866
Coordinates   1629000..1629344 (+) Length   114 a.a.
NCBI ID   WP_005599904.1    Uniprot ID   A3N254
Organism   Actinobacillus pleuropneumoniae serovar 8 str. 405     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1624000..1634344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1101_RS07575 (D1101_07640) rpsL 1624133..1624507 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  D1101_RS07580 (D1101_07645) rfaC 1624629..1625588 (-) 960 WP_005602025.1 lipopolysaccharide heptosyltransferase RfaC -
  D1101_RS07585 (D1101_07650) waaF 1625663..1626700 (-) 1038 WP_005619838.1 lipopolysaccharide heptosyltransferase II -
  D1101_RS07590 (D1101_07655) - 1626782..1627186 (-) 405 WP_005599908.1 MliC family protein -
  D1101_RS07595 (D1101_07660) - 1627308..1628699 (-) 1392 WP_039709275.1 LysM-like peptidoglycan-binding domain-containing protein -
  D1101_RS07600 (D1101_07665) comEA/comE1 1629000..1629344 (+) 345 WP_005599904.1 ComEA family DNA-binding protein Machinery gene
  D1101_RS07605 (D1101_07670) asd 1629495..1630385 (+) 891 WP_005602033.1 archaetidylserine decarboxylase -
  D1101_RS07610 (D1101_07675) hsdR 1630502..1632865 (+) 2364 WP_039709276.1 EcoAI/FtnUII family type I restriction enzme subunit R -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12446.30 Da        Isoelectric Point: 10.2030

>NTDB_id=312191 D1101_RS07600 WP_005599904.1 1629000..1629344(+) (comEA/comE1) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
MKKFARFSISFIIALLSADSIAKPNNPPVSEPTPVVQQMTTTNKTADKQNQVNINTADAAEIKSKLVGIGEKKAQAIVDY
RTKNGAFITIEQLTEVSGIGKATLEKNRERITLE

Nucleotide


Download         Length: 345 bp        

>NTDB_id=312191 D1101_RS07600 WP_005599904.1 1629000..1629344(+) (comEA/comE1) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
ATGAAAAAATTTGCCCGATTTAGTATTAGCTTCATCATTGCATTGTTATCCGCCGATTCAATCGCAAAGCCTAATAATCC
GCCCGTTTCCGAACCGACTCCCGTAGTTCAACAAATGACAACAACGAACAAAACTGCCGATAAACAAAATCAAGTGAATA
TCAATACGGCGGATGCAGCGGAAATTAAATCCAAACTGGTGGGAATCGGTGAGAAAAAAGCACAAGCGATTGTCGATTAC
CGCACTAAAAACGGTGCTTTTATTACGATAGAACAACTAACGGAAGTCTCCGGAATCGGTAAAGCGACACTAGAGAAAAA
TCGCGAACGCATCACGTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(48-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N254

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

58.261

100

0.588
  comE1/comEA Haemophilus influenzae Rd KW20

47.115

91.228

0.43

Multiple sequence alignment