Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | D1101_RS06755 | Genome accession | NZ_CP031866 |
| Coordinates | 1466655..1467203 (-) | Length | 182 a.a. |
| NCBI ID | WP_218633997.1 | Uniprot ID | - |
| Organism | Actinobacillus pleuropneumoniae serovar 8 str. 405 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1461655..1472203
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1101_RS06740 (D1101_06810) | - | 1462149..1462670 (+) | 522 | WP_005598290.1 | SprT family zinc-dependent metalloprotease | - |
| D1101_RS06745 (D1101_06815) | - | 1462775..1464061 (+) | 1287 | WP_005601799.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| D1101_RS06750 (D1101_06820) | - | 1464253..1466580 (-) | 2328 | WP_039709241.1 | Tex family protein | - |
| D1101_RS06755 (D1101_06825) | pilF | 1466655..1467203 (-) | 549 | WP_218633997.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| D1101_RS06760 (D1101_06830) | - | 1467257..1468438 (-) | 1182 | WP_005605050.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| D1101_RS06785 (D1101_06855) | gltX | 1469343..1470782 (+) | 1440 | WP_005608501.1 | glutamate--tRNA ligase | - |
| D1101_RS06795 (D1101_06865) | yefM | 1471120..1471371 (+) | 252 | WP_005598318.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| D1101_RS06800 (D1101_06870) | - | 1471368..1471628 (+) | 261 | WP_005605064.1 | Txe/YoeB family addiction module toxin | - |
| D1101_RS06805 (D1101_06875) | - | 1471787..1471954 (-) | 168 | WP_005598320.1 | Trm112 family protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20550.14 Da Isoelectric Point: 6.6260
>NTDB_id=312186 D1101_RS06755 WP_218633997.1 1466655..1467203(-) (pilF) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
MNLAKFLRNLSACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKSSDNCPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKANEALSQLEKLDKSRAAALR
MNLAKFLRNLSACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKSSDNCPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKANEALSQLEKLDKSRAAALR
Nucleotide
Download Length: 549 bp
>NTDB_id=312186 D1101_RS06755 WP_218633997.1 1466655..1467203(-) (pilF) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
ATGAATCTTGCAAAATTTTTGCGAAATTTGAGCGCTTGTATGCTGTTATCCGTGTTGTTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGTATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATCAAGTGATAATTGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGCAAATGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAATCAAGAGCGGCGGCACTACGCTAG
ATGAATCTTGCAAAATTTTTGCGAAATTTGAGCGCTTGTATGCTGTTATCCGTGTTGTTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGTATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATCAAGTGATAATTGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGCAAATGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAATCAAGAGCGGCGGCACTACGCTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
65.426 |
100 |
0.676 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
46.784 |
93.956 |
0.44 |