Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   D1103_RS06635 Genome accession   NZ_CP031864
Coordinates   1467979..1468527 (-) Length   182 a.a.
NCBI ID   WP_005605049.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae serovar 10 str. D13039     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1462979..1473527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1103_RS06620 (D1103_06690) - 1463461..1463982 (+) 522 WP_005598290.1 SprT family zinc-dependent metalloprotease -
  D1103_RS06625 (D1103_06695) - 1464087..1465373 (+) 1287 WP_005612721.1 NAD(P)/FAD-dependent oxidoreductase -
  D1103_RS06630 (D1103_06700) - 1465565..1467904 (-) 2340 WP_005612723.1 Tex family protein -
  D1103_RS06635 (D1103_06705) pilF 1467979..1468527 (-) 549 WP_005605049.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  D1103_RS06640 (D1103_06710) - 1468581..1469762 (-) 1182 WP_005605050.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  D1103_RS06665 (D1103_06735) gltX 1470667..1472106 (+) 1440 WP_005608501.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20689.37 Da        Isoelectric Point: 6.9479

>NTDB_id=312133 D1103_RS06635 WP_005605049.1 1467979..1468527(-) (pilF) [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQITFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKLSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSFENIVLCAKQEPNL
AKANEALSQLEKLDKSRAAALR

Nucleotide


Download         Length: 549 bp        

>NTDB_id=312133 D1103_RS06635 WP_005605049.1 1467979..1468527(-) (pilF) [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTATTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAATTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGGATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATTAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGTACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCTTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGCAAATGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAATCAAGAGCGGCGGCACTACGCTAG

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(79-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Glaesserella parasuis strain SC1401

66.489

100

0.687
  pilF/pilF2 Haemophilus influenzae Rd KW20

47.368

93.956

0.445

Multiple sequence alignment