Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | D1104_RS06930 | Genome accession | NZ_CP031863 |
| Coordinates | 1504988..1505536 (-) | Length | 182 a.a. |
| NCBI ID | WP_005598298.1 | Uniprot ID | - |
| Organism | Actinobacillus pleuropneumoniae serovar 11 str. 56153 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1499988..1510536
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1104_RS06915 (D1104_06955) | - | 1500472..1500993 (+) | 522 | WP_005598290.1 | SprT family zinc-dependent metalloprotease | - |
| D1104_RS06920 (D1104_06960) | - | 1501098..1502384 (+) | 1287 | WP_005598292.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| D1104_RS06925 (D1104_06965) | - | 1502574..1504913 (-) | 2340 | WP_005598295.1 | Tex family protein | - |
| D1104_RS06930 (D1104_06970) | pilF | 1504988..1505536 (-) | 549 | WP_005598298.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| D1104_RS06935 (D1104_06975) | - | 1505590..1506771 (-) | 1182 | WP_005598300.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| D1104_RS06960 (D1104_07000) | gltX | 1507675..1509114 (+) | 1440 | WP_005598316.1 | glutamate--tRNA ligase | - |
| D1104_RS06970 (D1104_07010) | yefM | 1509451..1509702 (+) | 252 | WP_005610475.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| D1104_RS06975 (D1104_07015) | - | 1509699..1509959 (+) | 261 | WP_005605064.1 | Txe/YoeB family addiction module toxin | - |
| D1104_RS06980 (D1104_07020) | - | 1510118..1510285 (-) | 168 | WP_005598320.1 | Trm112 family protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20641.32 Da Isoelectric Point: 6.9479
>NTDB_id=312106 D1104_RS06930 WP_005598298.1 1504988..1505536(-) (pilF) [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQITFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKSSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKARAAALR
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQITFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKSSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKARAAALR
Nucleotide
Download Length: 549 bp
>NTDB_id=312106 D1104_RS06930 WP_005598298.1 1504988..1505536(-) (pilF) [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTATTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAATTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGGATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATCAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGCACTACGCTAG
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTATTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAATTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGGATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATCAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGCACTACGCTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
65.957 |
100 |
0.681 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
46.199 |
93.956 |
0.434 |