Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | D1105_RS06355 | Genome accession | NZ_CP031862 |
| Coordinates | 1418092..1418640 (-) | Length | 182 a.a. |
| NCBI ID | WP_005615686.1 | Uniprot ID | - |
| Organism | Actinobacillus pleuropneumoniae strain 8329 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1413092..1423640
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1105_RS06340 (D1105_06390) | - | 1413574..1414095 (+) | 522 | WP_005598290.1 | SprT family zinc-dependent metalloprotease | - |
| D1105_RS06345 (D1105_06395) | - | 1414200..1415486 (+) | 1287 | WP_005615681.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| D1105_RS06350 (D1105_06400) | - | 1415678..1418017 (-) | 2340 | WP_005615683.1 | Tex family protein | - |
| D1105_RS06355 (D1105_06405) | pilF | 1418092..1418640 (-) | 549 | WP_005615686.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| D1105_RS06360 (D1105_06410) | - | 1418694..1419875 (-) | 1182 | WP_005608495.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| D1105_RS06385 (D1105_06435) | gltX | 1420779..1422218 (+) | 1440 | WP_005615688.1 | glutamate--tRNA ligase | - |
| D1105_RS06395 (D1105_06445) | yefM | 1422556..1422807 (+) | 252 | WP_005598318.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| D1105_RS06400 (D1105_06450) | - | 1422804..1423064 (+) | 261 | WP_005605064.1 | Txe/YoeB family addiction module toxin | - |
| D1105_RS06405 (D1105_06455) | - | 1423223..1423390 (-) | 168 | WP_005598320.1 | Trm112 family protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20617.21 Da Isoelectric Point: 6.9479
>NTDB_id=312081 D1105_RS06355 WP_005615686.1 1418092..1418640(-) (pilF) [Actinobacillus pleuropneumoniae strain 8329]
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKSSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKANEALSQLEKLDKSRAAALR
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKSSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKANEALSQLEKLDKSRAAALR
Nucleotide
Download Length: 549 bp
>NTDB_id=312081 D1105_RS06355 WP_005615686.1 1418092..1418640(-) (pilF) [Actinobacillus pleuropneumoniae strain 8329]
ATGAATCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCTGTGCTGTTCGGTTGTTCTTCTCAGCTTCC
TACCTCTCAAACCACGTTTAATCGTTCGGAAGCGGTTAAAGCGCGTATCAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATCAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGCAAATGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAATCAAGAGCGGCGGCACTACGCTAG
ATGAATCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCTGTGCTGTTCGGTTGTTCTTCTCAGCTTCC
TACCTCTCAAACCACGTTTAATCGTTCGGAAGCGGTTAAAGCGCGTATCAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATCAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGCAAATGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAATCAAGAGCGGCGGCACTACGCTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
66.489 |
100 |
0.687 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
46.199 |
93.956 |
0.434 |