Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   D1107_RS07065 Genome accession   NZ_CP031860
Coordinates   1548967..1549311 (+) Length   114 a.a.
NCBI ID   WP_005599904.1    Uniprot ID   A3N254
Organism   Actinobacillus pleuropneumoniae strain 3906     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1543967..1554311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1107_RS07040 (D1107_07110) rpsL 1544099..1544473 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  D1107_RS07045 (D1107_07115) rfaC 1544595..1545554 (-) 960 WP_237593144.1 lipopolysaccharide heptosyltransferase RfaC -
  D1107_RS07050 (D1107_07120) waaF 1545630..1546667 (-) 1038 WP_009875545.1 lipopolysaccharide heptosyltransferase II -
  D1107_RS07055 (D1107_07125) - 1546749..1547153 (-) 405 WP_005599908.1 MliC family protein -
  D1107_RS07060 (D1107_07130) - 1547275..1548666 (-) 1392 WP_005605242.1 LysM-like peptidoglycan-binding domain-containing protein -
  D1107_RS07065 (D1107_07135) comEA/comE1 1548967..1549311 (+) 345 WP_005599904.1 ComEA family DNA-binding protein Machinery gene
  D1107_RS07070 (D1107_07140) asd 1549462..1550352 (+) 891 WP_237592639.1 archaetidylserine decarboxylase -
  D1107_RS07075 (D1107_07145) hsdR 1550469..1552832 (+) 2364 WP_005608625.1 EcoAI/FtnUII family type I restriction enzme subunit R -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12446.30 Da        Isoelectric Point: 10.2030

>NTDB_id=312033 D1107_RS07065 WP_005599904.1 1548967..1549311(+) (comEA/comE1) [Actinobacillus pleuropneumoniae strain 3906]
MKKFARFSISFIIALLSADSIAKPNNPPVSEPTPVVQQMTTTNKTADKQNQVNINTADAAEIKSKLVGIGEKKAQAIVDY
RTKNGAFITIEQLTEVSGIGKATLEKNRERITLE

Nucleotide


Download         Length: 345 bp        

>NTDB_id=312033 D1107_RS07065 WP_005599904.1 1548967..1549311(+) (comEA/comE1) [Actinobacillus pleuropneumoniae strain 3906]
ATGAAAAAATTTGCCCGATTTAGTATTAGCTTCATCATTGCATTGTTATCCGCCGATTCAATCGCAAAGCCTAATAATCC
GCCCGTTTCCGAACCGACTCCCGTAGTTCAACAAATGACAACAACGAACAAAACTGCCGATAAACAAAATCAAGTGAATA
TCAATACGGCGGATGCAGCGGAAATTAAATCCAAACTGGTGGGAATCGGTGAGAAAAAAGCACAAGCGATTGTCGATTAC
CGCACTAAAAACGGTGCTTTTATTACGATAGAACAACTAACGGAAGTCTCCGGAATCGGTAAAGCGACACTAGAGAAAAA
TCGCGAACGCATCACGTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(48-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N254

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

58.261

100

0.588
  comE1/comEA Haemophilus influenzae Rd KW20

47.115

91.228

0.43

Multiple sequence alignment