Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | D1107_RS06200 | Genome accession | NZ_CP031860 |
| Coordinates | 1383775..1384323 (-) | Length | 182 a.a. |
| NCBI ID | WP_237592595.1 | Uniprot ID | - |
| Organism | Actinobacillus pleuropneumoniae strain 3906 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1378775..1389323
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1107_RS06185 (D1107_06255) | - | 1379257..1379778 (+) | 522 | WP_005598290.1 | SprT family zinc-dependent metalloprotease | - |
| D1107_RS06190 (D1107_06260) | - | 1379883..1381169 (+) | 1287 | WP_237592593.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| D1107_RS06195 (D1107_06265) | - | 1381361..1383700 (-) | 2340 | WP_237592594.1 | Tex family protein | - |
| D1107_RS06200 (D1107_06270) | pilF | 1383775..1384323 (-) | 549 | WP_237592595.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| D1107_RS06205 (D1107_06275) | - | 1384377..1385558 (-) | 1182 | WP_005608495.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| D1107_RS06230 (D1107_06300) | gltX | 1386463..1387902 (+) | 1440 | WP_237592596.1 | glutamate--tRNA ligase | - |
| D1107_RS06240 (D1107_06310) | yefM | 1388240..1388491 (+) | 252 | WP_017357689.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| D1107_RS06245 (D1107_06315) | - | 1388488..1388748 (+) | 261 | WP_237592597.1 | Txe/YoeB family addiction module toxin | - |
| D1107_RS06250 (D1107_06320) | - | 1388907..1389074 (-) | 168 | WP_005605066.1 | Trm112 family protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20603.14 Da Isoelectric Point: 6.6300
>NTDB_id=312029 D1107_RS06200 WP_237592595.1 1383775..1384323(-) (pilF) [Actinobacillus pleuropneumoniae strain 3906]
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPNAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKSSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKANEALSQLEKLDKSRAAALR
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPNAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKSSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKANEALSQLEKLDKSRAAALR
Nucleotide
Download Length: 549 bp
>NTDB_id=312029 D1107_RS06200 WP_237592595.1 1383775..1384323(-) (pilF) [Actinobacillus pleuropneumoniae strain 3906]
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTGTTCGGTTGTTCTTCTCAGCTTCC
TACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGTATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAACGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATCAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGCAAATGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAATCAAGAGCGGCGGCACTACGCTAG
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTGTTCGGTTGTTCTTCTCAGCTTCC
TACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGTATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAACGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATCAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGCAAATGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAATCAAGAGCGGCGGCACTACGCTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
65.957 |
100 |
0.681 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
46.199 |
93.956 |
0.434 |