Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   D1110_RS07825 Genome accession   NZ_CP031856
Coordinates   1693242..1693586 (-) Length   114 a.a.
NCBI ID   WP_005599904.1    Uniprot ID   A3N254
Organism   Actinobacillus pleuropneumoniae strain 16287-1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1688242..1698586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1110_RS07815 (D1110_07870) hsdR 1689721..1692084 (-) 2364 WP_005608625.1 EcoAI/FtnUII family type I restriction enzme subunit R -
  D1110_RS07820 (D1110_07875) asd 1692201..1693091 (-) 891 WP_005602033.1 archaetidylserine decarboxylase -
  D1110_RS07825 (D1110_07880) comEA/comE1 1693242..1693586 (-) 345 WP_005599904.1 ComEA family DNA-binding protein Machinery gene
  D1110_RS07830 (D1110_07885) - 1693887..1695257 (+) 1371 WP_237585888.1 LysM-like peptidoglycan-binding domain-containing protein -
  D1110_RS07835 (D1110_07890) - 1695379..1695783 (+) 405 WP_005599908.1 MliC family protein -
  D1110_RS07840 (D1110_07895) waaF 1695865..1696902 (+) 1038 WP_237585889.1 lipopolysaccharide heptosyltransferase II -
  D1110_RS07845 (D1110_07900) rfaC 1696977..1697936 (+) 960 WP_237585890.1 lipopolysaccharide heptosyltransferase RfaC -
  D1110_RS07850 (D1110_07905) rpsL 1698058..1698432 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12446.30 Da        Isoelectric Point: 10.2030

>NTDB_id=311954 D1110_RS07825 WP_005599904.1 1693242..1693586(-) (comEA/comE1) [Actinobacillus pleuropneumoniae strain 16287-1]
MKKFARFSISFIIALLSADSIAKPNNPPVSEPTPVVQQMTTTNKTADKQNQVNINTADAAEIKSKLVGIGEKKAQAIVDY
RTKNGAFITIEQLTEVSGIGKATLEKNRERITLE

Nucleotide


Download         Length: 345 bp        

>NTDB_id=311954 D1110_RS07825 WP_005599904.1 1693242..1693586(-) (comEA/comE1) [Actinobacillus pleuropneumoniae strain 16287-1]
ATGAAAAAATTTGCCCGATTTAGTATTAGCTTCATCATTGCATTGTTATCCGCCGATTCAATCGCAAAGCCTAATAATCC
GCCCGTTTCCGAACCGACTCCCGTAGTTCAACAAATGACAACAACGAACAAAACTGCCGATAAACAAAATCAAGTGAATA
TCAATACGGCGGATGCAGCGGAAATTAAATCCAAACTGGTGGGAATCGGTGAGAAAAAAGCACAAGCGATTGTCGATTAC
CGCACTAAAAACGGTGCTTTTATTACGATAGAACAACTAACGGAAGTCTCCGGAATCGGTAAAGCGACACTAGAGAAAAA
TCGCGAACGCATCACGTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(48-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N254

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

58.261

100

0.588
  comE1/comEA Haemophilus influenzae Rd KW20

47.115

91.228

0.43

Multiple sequence alignment