Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | D1110_RS06660 | Genome accession | NZ_CP031856 |
| Coordinates | 1460808..1461356 (-) | Length | 182 a.a. |
| NCBI ID | WP_237585836.1 | Uniprot ID | - |
| Organism | Actinobacillus pleuropneumoniae strain 16287-1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1455808..1466356
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1110_RS06645 (D1110_06695) | - | 1456292..1456813 (+) | 522 | WP_005598290.1 | SprT family zinc-dependent metalloprotease | - |
| D1110_RS06650 (D1110_06700) | - | 1456918..1458204 (+) | 1287 | WP_005617755.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| D1110_RS06655 (D1110_06705) | - | 1458394..1460733 (-) | 2340 | WP_005615683.1 | Tex family protein | - |
| D1110_RS06660 (D1110_06710) | pilF | 1460808..1461356 (-) | 549 | WP_237585836.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| D1110_RS06665 (D1110_06715) | - | 1461410..1462591 (-) | 1182 | WP_005598300.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| D1110_RS06690 (D1110_06740) | gltX | 1463495..1464934 (+) | 1440 | WP_005605060.1 | glutamate--tRNA ligase | - |
| D1110_RS06700 (D1110_06750) | yefM | 1465272..1465523 (+) | 252 | WP_005598318.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| D1110_RS06705 (D1110_06755) | - | 1465520..1465780 (+) | 261 | WP_005605064.1 | Txe/YoeB family addiction module toxin | - |
| D1110_RS06710 (D1110_06760) | - | 1465939..1466106 (-) | 168 | WP_005598320.1 | Trm112 family protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20656.34 Da Isoelectric Point: 7.3200
>NTDB_id=311949 D1110_RS06660 WP_237585836.1 1460808..1461356(-) (pilF) [Actinobacillus pleuropneumoniae strain 16287-1]
MNLAKFLRNLSACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKLSNNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKSRAAALR
MNLAKFLRNLSACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKLSNNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKSRAAALR
Nucleotide
Download Length: 549 bp
>NTDB_id=311949 D1110_RS06660 WP_237585836.1 1460808..1461356(-) (pilF) [Actinobacillus pleuropneumoniae strain 16287-1]
ATGAATCTTGCAAAATTTTTGCGAAATTTGAGCGCTTGTATGCTGTTATCCGTGTTGTTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGTATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTACCTACCTCACTCCGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCACGCCGAGCAAGCTTATCAGCAAGCATTGAAGCTGAGTAATAACCGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATCGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAATCAAGAGCGGCGGCACTACGCTAG
ATGAATCTTGCAAAATTTTTGCGAAATTTGAGCGCTTGTATGCTGTTATCCGTGTTGTTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGTATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTACCTACCTCACTCCGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCACGCCGAGCAAGCTTATCAGCAAGCATTGAAGCTGAGTAATAACCGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATCGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAATCAAGAGCGGCGGCACTACGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
67.553 |
100 |
0.698 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
47.368 |
93.956 |
0.445 |