Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | D1112_RS06335 | Genome accession | NZ_CP031854 |
| Coordinates | 1416371..1416919 (-) | Length | 182 a.a. |
| NCBI ID | WP_012263163.1 | Uniprot ID | B0BQK5 |
| Organism | Actinobacillus pleuropneumoniae strain ORG1224 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1411371..1421919
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1112_RS06320 (D1112_06375) | - | 1411855..1412376 (+) | 522 | WP_005598290.1 | SprT family zinc-dependent metalloprotease | - |
| D1112_RS06325 (D1112_06380) | - | 1412481..1413767 (+) | 1287 | WP_012263161.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| D1112_RS06330 (D1112_06385) | - | 1413957..1416296 (-) | 2340 | WP_012263162.1 | Tex family protein | - |
| D1112_RS06335 (D1112_06390) | pilF | 1416371..1416919 (-) | 549 | WP_012263163.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| D1112_RS06340 (D1112_06395) | - | 1416973..1418154 (-) | 1182 | WP_005608495.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| D1112_RS06365 (D1112_06420) | gltX | 1419059..1420498 (+) | 1440 | WP_005605060.1 | glutamate--tRNA ligase | - |
| D1112_RS06375 (D1112_06430) | yefM | 1420836..1421087 (+) | 252 | WP_005598318.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| D1112_RS06380 (D1112_06435) | - | 1421084..1421344 (+) | 261 | WP_005605064.1 | Txe/YoeB family addiction module toxin | - |
| D1112_RS06385 (D1112_06440) | - | 1421502..1421669 (-) | 168 | WP_009875287.1 | Trm112 family protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20654.32 Da Isoelectric Point: 6.9477
>NTDB_id=311897 D1112_RS06335 WP_012263163.1 1416371..1416919(-) (pilF) [Actinobacillus pleuropneumoniae strain ORG1224]
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKLSNNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVQSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKARAAALR
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKLSNNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVQSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKARAAALR
Nucleotide
Download Length: 549 bp
>NTDB_id=311897 D1112_RS06335 WP_012263163.1 1416371..1416919(-) (pilF) [Actinobacillus pleuropneumoniae strain ORG1224]
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTATTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGTATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTACCTACCTCACTCCGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCACGCCGAGCAAGCTTATCAGCAAGCATTGAAGCTGAGTAATAACCGTCC
GGATGTCTTAAATAATTACGGTACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATACCAACAATTTGAGCAAGCGG
TGCAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTAGAAAATATCGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGCACTGCGCTAG
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTATTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGTATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTACCTACCTCACTCCGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCACGCCGAGCAAGCTTATCAGCAAGCATTGAAGCTGAGTAATAACCGTCC
GGATGTCTTAAATAATTACGGTACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATACCAACAATTTGAGCAAGCGG
TGCAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTAGAAAATATCGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGCACTGCGCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
67.553 |
100 |
0.698 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
46.784 |
93.956 |
0.44 |