Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   D1O27_RS09610 Genome accession   NZ_CP031839
Coordinates   1810072..1811058 (-) Length   328 a.a.
NCBI ID   WP_000959292.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NX-T55     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1805072..1816058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1O27_RS09585 (D1O27_09585) - 1805332..1805679 (-) 348 WP_031589545.1 hypothetical protein -
  D1O27_RS09590 (D1O27_09590) - 1805865..1806458 (+) 594 WP_000224611.1 CYTH domain-containing protein -
  D1O27_RS09595 (D1O27_09595) - 1806562..1806927 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  D1O27_RS09600 (D1O27_09600) yjbH 1806950..1807756 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  D1O27_RS09605 (D1O27_09605) pepF 1808216..1810024 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  D1O27_RS09610 (D1O27_09610) coiA 1810072..1811058 (-) 987 WP_000959292.1 competence protein CoiA family protein Machinery gene
  D1O27_RS09615 (D1O27_09615) mecA 1811179..1811898 (-) 720 WP_001217723.1 adaptor protein MecA -
  D1O27_RS09620 (D1O27_09620) - 1812113..1813285 (-) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  D1O27_RS09630 (D1O27_09630) spxA 1813601..1813996 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  D1O27_RS09635 (D1O27_09635) trpS 1814291..1815280 (+) 990 WP_031589556.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38884.55 Da        Isoelectric Point: 9.7683

>NTDB_id=311744 D1O27_RS09610 WP_000959292.1 1810072..1811058(-) (coiA) [Staphylococcus aureus strain NX-T55]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=311744 D1O27_RS09610 WP_000959292.1 1810072..1811058(-) (coiA) [Staphylococcus aureus strain NX-T55]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.39

100

0.994
  coiA Staphylococcus aureus N315

97.561

100

0.976

Multiple sequence alignment