Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   D1O27_RS05965 Genome accession   NZ_CP031839
Coordinates   1105146..1105832 (+) Length   228 a.a.
NCBI ID   WP_072361794.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NX-T55     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1100146..1110832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1O27_RS05925 (D1O27_05925) yqeH 1100410..1101510 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  D1O27_RS05930 (D1O27_05930) - 1101540..1101773 (+) 234 Protein_1072 ribosome biogenesis GTPase YqeH -
  D1O27_RS05935 (D1O27_05935) aroE 1101787..1102593 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  D1O27_RS05940 (D1O27_05940) yhbY 1102597..1102887 (+) 291 WP_000627815.1 ribosome assembly RNA-binding protein YhbY -
  D1O27_RS05945 (D1O27_05945) nadD 1102890..1103459 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  D1O27_RS05950 (D1O27_05950) yqeK 1103449..1104033 (+) 585 WP_001019326.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  D1O27_RS05955 (D1O27_05955) rsfS 1104034..1104387 (+) 354 WP_001088020.1 ribosome silencing factor -
  D1O27_RS05960 (D1O27_05960) - 1104390..1105106 (+) 717 WP_117346056.1 class I SAM-dependent methyltransferase -
  D1O27_RS05965 (D1O27_05965) comEA 1105146..1105832 (+) 687 WP_072361794.1 ComEA family DNA-binding protein Machinery gene
  D1O27_RS05970 (D1O27_05970) - 1105924..1106385 (+) 462 WP_000439693.1 ComE operon protein 2 -
  D1O27_RS05975 (D1O27_05975) comEC 1106390..1108591 (+) 2202 WP_025174327.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  D1O27_RS05980 (D1O27_05980) holA 1108648..1109622 (+) 975 WP_031587652.1 DNA polymerase III subunit delta -
  D1O27_RS05985 (D1O27_05985) rpsT 1109667..1109918 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=311728 D1O27_RS05965 WP_072361794.1 1105146..1105832(+) (comEA) [Staphylococcus aureus strain NX-T55]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=311728 D1O27_RS05965 WP_072361794.1 1105146..1105832(+) (comEA) [Staphylococcus aureus strain NX-T55]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.678

99.561

0.982
  comEA Staphylococcus aureus N315

97.797

99.561

0.974

Multiple sequence alignment