Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | D1O27_RS03330 | Genome accession | NZ_CP031839 |
| Coordinates | 627984..628379 (+) | Length | 131 a.a. |
| NCBI ID | WP_000932694.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain NX-T55 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 622984..633379
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1O27_RS03300 (D1O27_03300) | - | 624242..624646 (+) | 405 | WP_001094394.1 | F0F1 ATP synthase subunit epsilon | - |
| D1O27_RS03305 (D1O27_03305) | - | 624984..625076 (+) | 93 | WP_001790611.1 | hypothetical protein | - |
| D1O27_RS03310 (D1O27_03310) | - | 625208..625441 (+) | 234 | WP_000384523.1 | DUF1146 family protein | - |
| D1O27_RS03315 (D1O27_03315) | murA | 625552..626817 (+) | 1266 | WP_000358006.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| D1O27_RS03320 (D1O27_03320) | fabZ | 626851..627291 (+) | 441 | WP_000447678.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| D1O27_RS03325 (D1O27_03325) | - | 627350..627790 (-) | 441 | WP_000846746.1 | YwpF-like family protein | - |
| D1O27_RS03330 (D1O27_03330) | ssb | 627984..628379 (+) | 396 | WP_000932694.1 | single-stranded DNA-binding protein | Machinery gene |
| D1O27_RS03335 (D1O27_03335) | sceD | 628767..629462 (+) | 696 | WP_000752008.1 | lytic transglycosylase SceD | - |
| D1O27_RS03345 (D1O27_03345) | tenA | 629986..630675 (+) | 690 | WP_000396077.1 | thiaminase II | - |
| D1O27_RS03350 (D1O27_03350) | thiD | 630668..631498 (+) | 831 | WP_000594960.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| D1O27_RS03355 (D1O27_03355) | thiM | 631482..632282 (+) | 801 | WP_031590212.1 | hydroxyethylthiazole kinase | - |
| D1O27_RS03360 (D1O27_03360) | thiE | 632275..632916 (+) | 642 | WP_000483155.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15042.09 Da Isoelectric Point: 5.6824
>NTDB_id=311717 D1O27_RS03330 WP_000932694.1 627984..628379(+) (ssb) [Staphylococcus aureus strain NX-T55]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI
Nucleotide
Download Length: 396 bp
>NTDB_id=311717 D1O27_RS03330 WP_000932694.1 627984..628379(+) (ssb) [Staphylococcus aureus strain NX-T55]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
100 |
100 |
1 |
| ssb | Staphylococcus aureus MW2 |
99.237 |
100 |
0.992 |