Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ECBD_RS05640 Genome accession   NC_012947
Coordinates   1136506..1137243 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli 'BL21-Gold(DE3)pLysS AG'     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1131506..1142243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECBD_RS05610 (ECBD_1084) yfiL 1131665..1132030 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  ECBD_RS05615 (ECBD_1085) aroF 1132240..1133310 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ECBD_RS05620 (ECBD_1086) tyrA 1133321..1134442 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ECBD_RS05625 (ECBD_1087) pheA 1134485..1135645 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  ECBD_RS25430 pheL 1135743..1135790 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ECBD_RS05630 (ECBD_1088) raiA 1135894..1136235 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ECBD_RS05640 (ECBD_1089) comL 1136506..1137243 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  ECBD_RS05645 (ECBD_1090) rluD 1137378..1138358 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ECBD_RS05650 (ECBD_1091) yfiH 1138355..1139086 (+) 732 WP_000040127.1 purine nucleoside phosphorylase YfiH -
  ECBD_RS05655 (ECBD_1092) clpC 1139216..1141789 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=31170 ECBD_RS05640 WP_000197686.1 1136506..1137243(-) (comL) [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=31170 ECBD_RS05640 WP_000197686.1 1136506..1137243(-) (comL) [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment