Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D0Z64_RS00050 Genome accession   NZ_CP031835
Coordinates   9912..10442 (+) Length   176 a.a.
NCBI ID   WP_080880961.1    Uniprot ID   -
Organism   Lactobacillus amylolyticus strain L5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4912..15442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0Z64_RS00040 gyrA 6878..9358 (+) 2481 WP_127345491.1 DNA gyrase subunit A -
  D0Z64_RS00045 rpsF 9565..9861 (+) 297 WP_006351700.1 30S ribosomal protein S6 -
  D0Z64_RS00050 ssb 9912..10442 (+) 531 WP_080880961.1 single-stranded DNA-binding protein Machinery gene
  D0Z64_RS00055 rpsR 10472..10705 (+) 234 WP_006351698.1 30S ribosomal protein S18 -
  D0Z64_RS00060 - 10845..12863 (+) 2019 WP_127345492.1 DHH family phosphoesterase -
  D0Z64_RS00065 rplI 12875..13330 (+) 456 WP_080880963.1 50S ribosomal protein L9 -
  D0Z64_RS00070 dnaB 13368..14759 (+) 1392 WP_080880964.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19061.67 Da        Isoelectric Point: 4.9323

>NTDB_id=311657 D0Z64_RS00050 WP_080880961.1 9912..10442(+) (ssb) [Lactobacillus amylolyticus strain L5]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNAQGERGADFISCVIWRKSAENFCSFTSKGSLVGVDGRIQTR
SYDNKDGQRVYVTEVIVDNFALLESRKDREARGQNGGYTPSNNGNAGASNTNNFQPNNGAASNNTNNNSNNSQNKPQDPF
AGSGDTIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=311657 D0Z64_RS00050 WP_080880961.1 9912..10442(+) (ssb) [Lactobacillus amylolyticus strain L5]
ATGATTAATAGAGTTGTACTTGTTGGCCGATTAACGCGTGATCCTGAATTACGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATGCTCAAGGTGAGAGAGGCGCAGACTTCATCAGTTGTGTTATTT
GGAGAAAATCAGCAGAAAACTTCTGCAGCTTTACTTCAAAAGGCTCATTAGTTGGTGTCGATGGCCGAATTCAAACCAGA
AGTTATGATAATAAAGATGGGCAAAGAGTATATGTAACTGAAGTTATAGTTGACAATTTTGCATTGCTCGAATCACGCAA
AGATCGTGAAGCCCGTGGCCAAAATGGTGGGTACACACCAAGTAATAACGGAAATGCTGGCGCATCAAACACTAACAATT
TCCAACCTAATAATGGGGCAGCATCGAATAATACTAATAACAATAGCAATAATTCACAAAATAAGCCGCAAGATCCATTT
GCCGGCTCAGGTGATACTATTGATATTTCCGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.556

100

0.619
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.494

100

0.551

Multiple sequence alignment