Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   D0819_RS03945 Genome accession   NZ_CP031784
Coordinates   730497..731390 (+) Length   297 a.a.
NCBI ID   WP_153256750.1    Uniprot ID   -
Organism   Bacillus subtilis strain HMNig-2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 725497..736390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS03925 (D0819_03935) - 726167..727897 (+) 1731 WP_103803467.1 hypothetical protein -
  D0819_RS03930 (D0819_03940) ylqH 727894..728175 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  D0819_RS03935 (D0819_03945) sucC 728348..729505 (+) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  D0819_RS03940 (D0819_03950) sucD 729534..730436 (+) 903 WP_024572248.1 succinate--CoA ligase subunit alpha -
  D0819_RS03945 (D0819_03955) dprA 730497..731390 (+) 894 WP_153256750.1 DNA-processing protein DprA Machinery gene
  D0819_RS03950 (D0819_03960) topA 731578..733653 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  D0819_RS03955 (D0819_03965) trmFO 733729..735036 (+) 1308 WP_153256751.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  D0819_RS03960 (D0819_03970) xerC 735104..736018 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32890.18 Da        Isoelectric Point: 9.9142

>NTDB_id=311362 D0819_RS03945 WP_153256750.1 730497..731390(+) (dprA) [Bacillus subtilis strain HMNig-2]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKVQRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=311362 D0819_RS03945 WP_153256750.1 730497..731390(+) (dprA) [Bacillus subtilis strain HMNig-2]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCTGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGGTCCAGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGAAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAGCACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCAGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.653

100

0.987
  dprA Lactococcus lactis subsp. cremoris KW2

42.481

89.562

0.38

Multiple sequence alignment