Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   D0808_RS18655 Genome accession   NZ_CP031783
Coordinates   3619080..3619724 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain MENO2 voucher National Research Centre     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3614080..3624724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0808_RS18620 (D0808_18740) mrpB 3615272..3615703 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  D0808_RS18625 (D0808_18745) mrpC 3615703..3616044 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  D0808_RS18630 (D0808_18750) mrpD 3616037..3617518 (+) 1482 WP_003228817.1 Na+/H+ antiporter subunit D -
  D0808_RS18635 (D0808_18755) mrpE 3617524..3618000 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  D0808_RS18640 (D0808_18760) mrpF 3618000..3618284 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  D0808_RS18645 (D0808_18765) mnhG 3618268..3618642 (+) 375 WP_153256441.1 monovalent cation/H(+) antiporter subunit G -
  D0808_RS18650 (D0808_18770) yuxO 3618681..3619061 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  D0808_RS18655 (D0808_18775) comA 3619080..3619724 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  D0808_RS18660 (D0808_18780) comP 3619805..3622105 (-) 2301 WP_153256442.1 histidine kinase Regulator
  D0808_RS18665 (D0808_18785) comX 3622117..3622281 (-) 165 WP_015384519.1 competence pheromone ComX -
  D0808_RS18670 (D0808_18790) - 3622294..3623154 (-) 861 WP_064671628.1 polyprenyl synthetase family protein -
  D0808_RS18675 (D0808_18795) degQ 3623339..3623479 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  D0808_RS21145 - 3623701..3623763 (+) 63 Protein_3633 hypothetical protein -
  D0808_RS18680 (D0808_18800) - 3623941..3624309 (+) 369 WP_153256443.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=311333 D0808_RS18655 WP_003220716.1 3619080..3619724(-) (comA) [Bacillus subtilis strain MENO2 voucher National Research Centre]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=311333 D0808_RS18655 WP_003220716.1 3619080..3619724(-) (comA) [Bacillus subtilis strain MENO2 voucher National Research Centre]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment