Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   D0808_RS14560 Genome accession   NZ_CP031783
Coordinates   2866065..2867795 (-) Length   576 a.a.
NCBI ID   WP_153256192.1    Uniprot ID   -
Organism   Bacillus subtilis strain MENO2 voucher National Research Centre     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2861065..2872795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0808_RS14535 (D0808_14655) - 2861118..2861414 (-) 297 WP_086344612.1 hypothetical protein -
  D0808_RS14540 - 2861722..2861874 (+) 153 WP_130572550.1 hypothetical protein -
  D0808_RS14545 (D0808_14660) yqiG 2861947..2863065 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  D0808_RS14550 (D0808_14665) spo0A 2863531..2864334 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  D0808_RS14555 (D0808_14670) spoIVB 2864610..2865890 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  D0808_RS14560 (D0808_14675) recN 2866065..2867795 (-) 1731 WP_153256192.1 DNA repair protein RecN Machinery gene
  D0808_RS14565 (D0808_14680) argR 2867832..2868281 (-) 450 WP_124072962.1 arginine repressor ArgR -
  D0808_RS14570 (D0808_14685) yqxC 2868379..2869224 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  D0808_RS14575 (D0808_14690) dxs 2869221..2871122 (-) 1902 WP_015384069.1 1-deoxy-D-xylulose-5-phosphate synthase -
  D0808_RS14580 (D0808_14695) ispA 2871297..2872187 (-) 891 WP_153256193.1 polyprenyl synthetase family protein -
  D0808_RS14585 (D0808_14700) xseB 2872177..2872431 (-) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64579.48 Da        Isoelectric Point: 4.8022

>NTDB_id=311310 D0808_RS14560 WP_153256192.1 2866065..2867795(-) (recN) [Bacillus subtilis strain MENO2 voucher National Research Centre]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLDVC
AEQGIDVSDKMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALK
TYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEFDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPLVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=311310 D0808_RS14560 WP_153256192.1 2866065..2867795(-) (recN) [Bacillus subtilis strain MENO2 voucher National Research Centre]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATTATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCAAAAGCCGAACTTGAAGGGCTGTTTCTGTTGGAGAGCGGCCATCCTGTTTTAGATGTATGC
GCTGAGCAGGGAATCGACGTTTCAGACAAAATGATCGTCATGAGAAGGGATATCAGCACGAGCGGGAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCTTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAAGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGGGCCGAAGTGGAAAGCGCGCTCAAA
ACGTATCAGGAAGGGTACCAGCGGTATATGAAGCTGCTCAAAAAGCTTAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGCCTTGATCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTTGAGCTTAACGAAGATGAACAGCTCC
AAGAAGAGCGCCAGCAAATTTCAAACTTTGAGAAGATATATGAATCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGATTGGACTGGGTCGGAATGGCATCAGCGCAGCTTGAAGATATATCTGATATTAACGAACCGCTAAAAAAACT
GTCTGAAAGTGTTTCGAACTCCTACTATTTGCTTGAGGATGCCACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
TTGATCCGGAACGCCTGAACTATATTGAGACGCGACTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTT
GAAGACATTTTGGAATATGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCACCTTCAAAGCTT
GAAAAAGGAGCTTGACTCCGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTGTCACAAATCCGAAAAACATGGGCGA
AAAAGCTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACTTTTGATACGGAATTTAAGGTC
AGAACAGCGTCACGCAATGAAGAGGCGCCGCTTGTAAACGGCCAGCCCGTTCAGCTGACTGAACAAGGGATTGACCTGGT
GAAGTTTTTAATTTCAACCAATACAGGCGAGCCGCTGAAATCCCTTTCGAAAGTCGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTTTCCTCACAACAGGATGTGACATCGATCATTTTTGATGAGGTTGATACCGGTGTA
AGCGGCAGGGTCGCACAGGCAATCGCTGAGAAGATCCATAAGGTGTCAATAGGATCACAAGTGCTGTGCATTACACACCT
GCCTCAGGTGGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACGTGTCA
AGCCGCTGTCTAAGCAGGAAAAGGTAGCGGAAATCGGGCGCATGATTGCAGGTGTCGAAGTAACCGACTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

99.306

100

0.993

Multiple sequence alignment