Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   D0808_RS14550 Genome accession   NZ_CP031783
Coordinates   2863531..2864334 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain MENO2 voucher National Research Centre     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2858531..2869334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0808_RS14525 (D0808_14645) glpQB 2859668..2860399 (-) 732 WP_153256191.1 glycerophosphodiester phosphodiesterase -
  D0808_RS14530 (D0808_14650) yqiI 2860478..2861098 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  D0808_RS14535 (D0808_14655) - 2861118..2861414 (-) 297 WP_086344612.1 hypothetical protein -
  D0808_RS14540 - 2861722..2861874 (+) 153 WP_130572550.1 hypothetical protein -
  D0808_RS14545 (D0808_14660) yqiG 2861947..2863065 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  D0808_RS14550 (D0808_14665) spo0A 2863531..2864334 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  D0808_RS14555 (D0808_14670) spoIVB 2864610..2865890 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  D0808_RS14560 (D0808_14675) recN 2866065..2867795 (-) 1731 WP_153256192.1 DNA repair protein RecN Machinery gene
  D0808_RS14565 (D0808_14680) argR 2867832..2868281 (-) 450 WP_124072962.1 arginine repressor ArgR -
  D0808_RS14570 (D0808_14685) yqxC 2868379..2869224 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=311309 D0808_RS14550 WP_003226427.1 2863531..2864334(-) (spo0A) [Bacillus subtilis strain MENO2 voucher National Research Centre]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=311309 D0808_RS14550 WP_003226427.1 2863531..2864334(-) (spo0A) [Bacillus subtilis strain MENO2 voucher National Research Centre]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGCTGTTCGGCTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment