Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   D0808_RS04675 Genome accession   NZ_CP031783
Coordinates   899438..899887 (-) Length   149 a.a.
NCBI ID   WP_124060108.1    Uniprot ID   -
Organism   Bacillus subtilis strain MENO2 voucher National Research Centre     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 894438..904887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0808_RS04635 - 894761..894958 (+) 198 WP_153255654.1 hypothetical protein -
  D0808_RS04640 (D0808_04690) yckC 894978..895433 (+) 456 WP_153255655.1 RDD family protein -
  D0808_RS04645 (D0808_04695) yckD 895515..895847 (+) 333 WP_015252849.1 YckD family protein -
  D0808_RS04650 (D0808_04700) - 895975..896397 (+) 423 WP_174616579.1 MarR family transcriptional regulator -
  D0808_RS04655 (D0808_04705) - 896385..896726 (+) 342 WP_032724911.1 DUF3147 family protein -
  D0808_RS04660 (D0808_04710) - 896745..897472 (+) 728 Protein_875 AAA family ATPase -
  D0808_RS04665 (D0808_04715) bglC 897544..898976 (+) 1433 Protein_876 6-phospho-beta-glucosidase -
  D0808_RS04670 (D0808_04720) nin/comJ 899013..899411 (-) 399 WP_015252845.1 DNA-entry nuclease inhibitor Regulator
  D0808_RS04675 (D0808_04725) nucA/comI 899438..899887 (-) 450 WP_124060108.1 DNA-entry nuclease Machinery gene
  D0808_RS04680 (D0808_04730) tlpC 900055..901776 (-) 1722 WP_153255656.1 methyl-accepting chemotaxis protein TlpC -
  D0808_RS04685 (D0808_04735) hxlB 901887..902444 (-) 558 WP_086343442.1 6-phospho-3-hexuloisomerase -
  D0808_RS04690 (D0808_04740) hxlA 902450..903082 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  D0808_RS04695 (D0808_04745) hxlR 903314..903676 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16456.39 Da        Isoelectric Point: 4.5282

>NTDB_id=311280 D0808_RS04675 WP_124060108.1 899438..899887(-) (nucA/comI) [Bacillus subtilis strain MENO2 voucher National Research Centre]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETISFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=311280 D0808_RS04675 WP_124060108.1 899438..899887(-) (nucA/comI) [Bacillus subtilis strain MENO2 voucher National Research Centre]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATAATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCTCCTTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98

Multiple sequence alignment