Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   D0808_RS00775 Genome accession   NZ_CP031783
Coordinates   142242..142361 (+) Length   39 a.a.
NCBI ID   WP_041334633.1    Uniprot ID   A0AA96UN30
Organism   Bacillus subtilis strain MENO2 voucher National Research Centre     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 137242..147361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0808_RS00750 (D0808_00750) albG 137438..138139 (+) 702 WP_029318695.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  D0808_RS00755 (D0808_00755) ywhL 138145..139488 (-) 1344 WP_153255451.1 YncE family protein -
  D0808_RS00760 (D0808_00760) ywhK 139528..140883 (-) 1356 WP_153255452.1 YncE family protein -
  D0808_RS21215 (D0808_00765) - 140880..141110 (-) 231 WP_024572000.1 hypothetical protein -
  D0808_RS00770 (D0808_00770) rapF 141113..142258 (+) 1146 WP_086344441.1 response regulator aspartate phosphatase RapF Regulator
  D0808_RS00775 (D0808_00775) phrF 142242..142361 (+) 120 WP_041334633.1 phosphatase RapF inhibitor PhrF Regulator
  D0808_RS00780 (D0808_00780) ywhH 142459..142921 (+) 463 Protein_159 YbaK/EbsC family protein -
  D0808_RS00785 (D0808_00785) speB 142953..143825 (-) 873 WP_003227545.1 agmatinase -
  D0808_RS00790 (D0808_00790) speE 143886..144716 (-) 831 WP_003227543.1 spermidine synthase -
  D0808_RS00795 (D0808_00795) pbpG 144918..146993 (+) 2076 WP_015384942.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4215.16 Da        Isoelectric Point: 9.5675

>NTDB_id=311269 D0808_RS00775 WP_041334633.1 142242..142361(+) (phrF) [Bacillus subtilis strain MENO2 voucher National Research Centre]
MKLKSKLLLSCLALCTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=311269 D0808_RS00775 WP_041334633.1 142242..142361(+) (phrF) [Bacillus subtilis strain MENO2 voucher National Research Centre]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTATGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

97.436

100

0.974
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment