Detailed information NTG0311253

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: D0853_RS15080
• Genome accession: NZ_CP031781
• Coordinates: 3004333..3005340 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain VPD14
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2999333..3010340

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0853_RS15055 (D0853_15085)	rplC	2999867..3000496 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
D0853_RS15060 (D0853_15090)	rpsJ	3000511..3000822 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
D0853_RS15065 (D0853_15095)	rpmE	3001280..3001501 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
D0853_RS15075 (D0853_15105)	priA	3001796..3004000 (+)	2205	WP_005481427.1	primosomal protein N'	-
D0853_RS15080 (D0853_15110)	cytR	3004333..3005340 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
D0853_RS15085 (D0853_15115)	ftsN	3005517..3006062 (+)	546	WP_005481405.1	cell division protein FtsN	-
D0853_RS15090 (D0853_15120)	hslV	3006227..3006778 (+)	552	WP_005455873.1	ATP-dependent protease subunit HslV	-
D0853_RS15095 (D0853_15125)	hslU	3006802..3008133 (+)	1332	WP_005457198.1	HslU--HslV peptidase ATPase subunit	-
D0853_RS15100 (D0853_15130)	-	3008318..3009235 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
D0853_RS15105 (D0853_15135)	rraA	3009312..3009824 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
D0853_RS15110 (D0853_15140)	zapB	3009929..3010171 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=311253 D0853_RS15080 WP_005481416.1 3004333..3005340(+) (cytR) [Vibrio parahaemolyticus strain VPD14]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=311253 D0853_RS15080 WP_005481416.1 3004333..3005340(+) (cytR) [Vibrio parahaemolyticus strain VPD14]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGTACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GTGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCAAGAAGCCAAACGACTCGGTCTGCGCGTTCCGCAAGATTT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904