Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   E4U64_RS06195 Genome accession   NZ_CP038287
Coordinates   1261326..1262063 (-) Length   245 a.a.
NCBI ID   WP_171888290.1    Uniprot ID   -
Organism   Escherichia coli O157:H7 strain TX 376-2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1256326..1267063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4U64_RS06165 (E4U64_06345) yfiL 1256484..1256849 (-) 366 WP_001301878.1 DUF2799 domain-containing protein -
  E4U64_RS06170 (E4U64_06350) aroF 1257059..1258129 (+) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  E4U64_RS06175 (E4U64_06355) tyrA 1258140..1259261 (+) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  E4U64_RS06180 (E4U64_06360) pheA 1259304..1260464 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  E4U64_RS06185 (E4U64_06365) pheL 1260563..1260610 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  E4U64_RS06190 (E4U64_06370) raiA 1260714..1261055 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  E4U64_RS06195 (E4U64_06375) comL 1261326..1262063 (-) 738 WP_171888290.1 outer membrane protein assembly factor BamD Machinery gene
  E4U64_RS06200 (E4U64_06380) rluD 1262198..1263178 (+) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  E4U64_RS06205 (E4U64_06385) yfiH 1263175..1263906 (+) 732 WP_000040152.1 purine nucleoside phosphorylase YfiH -
  E4U64_RS06210 (E4U64_06390) clpC 1264036..1266609 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27828.41 Da        Isoelectric Point: 7.1585

>NTDB_id=311012 E4U64_RS06195 WP_171888290.1 1261326..1262063(-) (comL) [Escherichia coli O157:H7 strain TX 376-2]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSNRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=311012 E4U64_RS06195 WP_171888290.1 1261326..1262063(-) (comL) [Escherichia coli O157:H7 strain TX 376-2]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCA
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371