Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DDV21_RS03955 Genome accession   NZ_CP031733
Coordinates   784479..786278 (+) Length   599 a.a.
NCBI ID   WP_116878474.1    Uniprot ID   A0A372KKT2
Organism   Streptococcus chenjunshii strain Z15     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 779479..791278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDV21_RS03930 (DDV21_003930) queA 779861..780889 (-) 1029 WP_116878479.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  DDV21_RS03935 (DDV21_003935) - 781046..781537 (+) 492 WP_116878478.1 VIT1/CCC1 transporter family protein -
  DDV21_RS03940 (DDV21_003940) nagB 781637..782338 (+) 702 WP_116878477.1 glucosamine-6-phosphate deaminase -
  DDV21_RS03945 (DDV21_003945) coiA 782632..783585 (+) 954 WP_116878476.1 competence protein CoiA family protein Machinery gene
  DDV21_RS03955 (DDV21_003955) pepF 784479..786278 (+) 1800 WP_116878474.1 oligoendopeptidase F Regulator
  DDV21_RS03960 (DDV21_003960) - 786301..787014 (+) 714 WP_116878473.1 O-methyltransferase -
  DDV21_RS03965 (DDV21_003965) prsA 787159..788142 (+) 984 WP_116878472.1 peptidylprolyl isomerase PrsA -
  DDV21_RS03970 (DDV21_003970) alaS 788631..791249 (+) 2619 WP_116878471.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 68676.66 Da        Isoelectric Point: 4.5984

>NTDB_id=310830 DDV21_RS03955 WP_116878474.1 784479..786278(+) (pepF) [Streptococcus chenjunshii strain Z15]
MSDNRSQMAKEYQWDLTTVFATDEAWEAEAENLSAEIATAGRYAGHLLDSGDKLLEITEMQLALSRRLEKVYVYASMRND
QDTTVAKYQEFQSKATALYAQFSEAFAFYEPELLSLSQEDFAVFLAETPALSAYSHFFDKLFKQQSHVLSQAEEELLAGA
QEILGAAGETFEVLDNADIVLPVVTNEAGQEIQLTHGNFISLMEAKDRKIRKQAYEAMYSVYEQYQHTYAKTLQTTVKGH
NYQARVRKYSSAREAALSANFIPEKVYDTLIKAVNKHLPLLHRYIKLRERVLELDDLKMYDLYAPLSQTELPFTYQEARG
KAEKVLSILGSEYSERVHRAFNDGWIDVYENKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLQEVTDDSQRFAILNHYLDAFKGTVFRQAQFAEFEQLIHEADQNGEVLTSDF
LSNLYADLNEKYYGLAKEDNHLIRYEWARIPHFYYNYYVYQYATGFAAAGYLADKIMYGQPEDKDRYLAYLKAGNSDYAL
KVIQKAGLDMTNEAYLDTAFGVFADRLDELEKLIQKADS

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=310830 DDV21_RS03955 WP_116878474.1 784479..786278(+) (pepF) [Streptococcus chenjunshii strain Z15]
ATGTCAGATAATCGCAGCCAGATGGCTAAAGAGTATCAGTGGGATTTGACAACTGTTTTTGCGACAGATGAAGCATGGGA
AGCTGAGGCAGAGAATTTGTCTGCTGAAATTGCAACAGCAGGCAGGTACGCCGGACATCTGCTAGATTCGGGGGACAAGC
TGCTGGAAATTACTGAGATGCAGCTGGCTCTGTCCCGTCGTCTGGAAAAAGTCTATGTCTATGCTTCAATGAGGAATGAT
CAGGATACGACGGTGGCTAAATATCAGGAATTTCAGTCTAAGGCGACAGCGCTTTATGCTCAGTTCAGTGAGGCTTTCGC
TTTTTATGAGCCGGAGCTGCTGTCTCTGTCACAGGAAGATTTTGCTGTTTTTCTGGCTGAAACACCGGCTTTATCTGCCT
ACAGTCATTTTTTTGATAAACTTTTTAAACAGCAGTCACATGTTTTGTCACAGGCTGAAGAAGAGCTGCTGGCAGGTGCT
CAGGAAATTTTAGGGGCAGCTGGTGAAACTTTTGAAGTCCTTGATAATGCCGATATTGTCCTGCCAGTTGTAACAAATGA
GGCCGGACAAGAGATTCAGCTGACTCACGGCAACTTTATCAGCCTGATGGAAGCAAAAGACAGAAAGATCCGTAAGCAGG
CTTACGAAGCGATGTACAGTGTTTATGAGCAGTATCAGCACACCTATGCCAAAACACTGCAGACAACAGTCAAAGGGCAT
AATTATCAGGCACGAGTCCGTAAATACAGCAGTGCACGTGAAGCGGCTCTGTCAGCTAATTTTATTCCCGAGAAGGTTTA
TGATACCTTGATTAAGGCTGTTAATAAGCACTTGCCGCTGCTTCACCGTTATATTAAACTGCGTGAAAGAGTTCTTGAAC
TTGATGACTTAAAAATGTACGATCTCTATGCCCCCTTATCGCAGACAGAGCTTCCTTTTACCTATCAAGAAGCACGCGGC
AAAGCAGAAAAAGTGCTTTCTATTCTGGGGTCGGAATATTCTGAGCGTGTTCACCGCGCCTTTAATGATGGTTGGATTGA
TGTTTATGAAAATAAGGGCAAGCGTTCAGGAGCTTACTCTGGCGGTTCTTATGATACAAACGCTTTTATGCTGCTCAACT
GGCAGGACACACTGGATAACTTATTTACACTTGTACACGAGACTGGCCACAGTATGCATTCGACATTTACCAGAGAAAAT
CAGCCTTATGTATACGGTGACTACAGTATTTTTCTGGCCGAAATCGCTTCTACCACCAATGAAAATATCCTGACCGAAAC
GCTCTTGCAGGAAGTGACTGATGACAGTCAGCGCTTTGCTATTCTTAACCATTACTTAGATGCTTTTAAAGGCACTGTTT
TCCGCCAGGCTCAGTTTGCGGAATTTGAGCAGTTAATTCATGAGGCTGACCAAAACGGTGAAGTACTGACCAGTGATTTT
CTCAGCAATCTTTACGCTGATCTGAATGAAAAATACTATGGCCTAGCCAAAGAGGACAATCATCTGATACGGTACGAATG
GGCCCGGATTCCGCATTTTTACTACAATTACTATGTTTATCAGTATGCGACAGGTTTTGCCGCTGCCGGTTATTTGGCAG
ACAAAATAATGTACGGGCAGCCGGAAGATAAAGACCGCTATCTTGCCTACCTAAAAGCCGGAAACTCTGATTATGCGCTT
AAGGTTATTCAAAAAGCCGGTCTTGACATGACTAATGAAGCTTATCTTGATACTGCTTTTGGTGTTTTTGCAGACCGTCT
GGATGAATTGGAAAAATTGATTCAAAAAGCTGATTCTTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-179)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A372KKT2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.337

99.666

0.671

Multiple sequence alignment