Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   D0T92_RS10685 Genome accession   NZ_CP031700
Coordinates   2304828..2306870 (-) Length   680 a.a.
NCBI ID   WP_191963699.1    Uniprot ID   -
Organism   Neisseria zalophi strain ATCC BAA-2455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2299828..2311870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0T92_RS10655 (D0T92_10715) erpA 2300228..2300566 (-) 339 WP_151053070.1 iron-sulfur cluster insertion protein ErpA -
  D0T92_RS10660 (D0T92_10720) hemH 2300845..2301864 (-) 1020 WP_151052716.1 ferrochelatase -
  D0T92_RS10665 (D0T92_10725) - 2301967..2302377 (-) 411 WP_151052719.1 YqaA family protein -
  D0T92_RS10675 (D0T92_10735) - 2303400..2303846 (+) 447 WP_151052723.1 hypothetical protein -
  D0T92_RS10680 (D0T92_10740) nfsA 2303918..2304649 (-) 732 WP_151052725.1 oxygen-insensitive NADPH nitroreductase -
  D0T92_RS10685 (D0T92_10745) recG 2304828..2306870 (-) 2043 WP_191963699.1 ATP-dependent DNA helicase RecG Machinery gene
  D0T92_RS10690 (D0T92_10750) - 2306983..2307381 (-) 399 WP_151052729.1 MliC family protein -
  D0T92_RS10695 (D0T92_10755) ileS 2307620..2310406 (+) 2787 WP_151052731.1 isoleucine--tRNA ligase -
  D0T92_RS10700 (D0T92_10760) - 2310616..2311266 (-) 651 WP_151052733.1 site-2 protease family protein -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 75557.51 Da        Isoelectric Point: 7.7438

>NTDB_id=310565 D0T92_RS10685 WP_191963699.1 2304828..2306870(-) (recG) [Neisseria zalophi strain ATCC BAA-2455]
MMTPEHQKLLKITEATAKKLEKLHLQTPWDVVLHLPLRYEDETHIMPIKDAPLGVPCQVEGEVIHQEVRFKPRKQLIVQI
RDDGGSVLFLRFIHFYPSHQKQMAEGKRIRAVGEIKHGFYGSEMIHPKIRDAENSGLAESLTPVYPSVNGLNQPTLRRIV
QTALEAVSLHDTLPDELLGRLKLPHLAESLRLLHAPPPEYGIYQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGQA
KPLTGTGAWSDKLLAALPFGLTQAQQRVLSEIRVDMAQTHPMHRLLQGDVGSGKTIVAALAALTAVEAGFQVAVMAPTEI
LAEQHYLKFKQWFEPLGLAVARLSGSQRKKAKEQNKAAISDGLAPIAVGTHALFQDDVQFQRLGLVIVDEQHRFGVAQRL
ALKNKGSDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPNRTPVKTRLVNSARRAEVEGFVLNTCRKGQQVYWVCPLI
EESEVLQLQTAVDTLAELQTALPELTVGLVHGRMKAAEKAAVMDEFSSGRLNVLVATTVIEVGVDVPNASLMVIEHAERM
GLAQLHQLRGRVGRGAAVSTCVLLFSEPLSDLAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEE
DLYLLEHAREIAPRLIAERPDIVEAHLARWLASRENYLGV

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=310565 D0T92_RS10685 WP_191963699.1 2304828..2306870(-) (recG) [Neisseria zalophi strain ATCC BAA-2455]
ATTATGACCCCCGAACATCAAAAACTACTCAAAATCACAGAGGCGACTGCCAAAAAATTGGAAAAGCTTCATCTTCAAAC
ACCATGGGATGTCGTGCTGCATCTGCCGCTGCGTTATGAAGACGAAACCCATATTATGCCGATAAAAGATGCGCCGCTCG
GTGTGCCTTGTCAGGTTGAGGGTGAGGTGATTCATCAGGAAGTTCGGTTTAAGCCGCGTAAACAGCTTATCGTGCAGATA
CGTGATGATGGCGGCAGTGTTTTGTTTTTACGGTTTATTCATTTCTATCCCAGCCATCAAAAACAAATGGCGGAGGGCAA
ACGTATACGGGCGGTTGGCGAAATCAAACACGGCTTCTATGGCAGCGAAATGATTCACCCGAAAATCCGTGATGCCGAAA
ACAGTGGTTTGGCAGAAAGCCTAACGCCGGTTTATCCCAGTGTGAACGGATTAAACCAGCCCACTTTACGGCGGATTGTT
CAGACGGCCTTAGAAGCCGTATCGTTACATGACACTTTGCCGGATGAATTATTAGGCCGTCTGAAACTGCCGCACTTGGC
CGAAAGCCTGCGGTTGTTGCACGCGCCGCCGCCTGAATATGGTATTTACCAGCTTTCAGACGGCACTTTGCCGGCGTGGC
AGCGTTTGAAGTTTGATGAATTATTGGCACAACAACTTTCCATGCGGCTGGCACGGCAGAAACGTGTCAGTGGACAGGCC
AAGCCGCTGACGGGTACGGGGGCTTGGTCGGATAAATTGCTTGCGGCTTTACCGTTCGGGCTTACGCAGGCACAGCAACG
CGTATTGTCTGAAATTCGGGTTGATATGGCACAAACCCATCCTATGCACCGTTTATTGCAAGGTGATGTCGGCAGTGGCA
AAACCATTGTGGCTGCATTGGCGGCGCTGACGGCGGTGGAAGCCGGTTTTCAAGTGGCGGTGATGGCGCCGACTGAAATT
CTGGCCGAACAACATTATCTTAAGTTTAAACAATGGTTCGAGCCTTTGGGCTTGGCGGTGGCAAGGCTTTCCGGTAGCCA
ACGCAAAAAGGCGAAAGAACAAAATAAAGCGGCTATTTCAGACGGCCTGGCACCGATTGCCGTCGGTACGCATGCTTTGT
TTCAAGATGATGTTCAGTTTCAGCGTTTGGGATTGGTGATTGTAGATGAACAGCACCGTTTCGGGGTTGCTCAACGATTG
GCATTGAAAAACAAAGGCAGCGATGTTCACCAACTGATGATGTCGGCGACGCCGATTCCACGCACATTGGCCATGAGCTT
TTTTGCCGATTTGGATGTTTCGGTGATTGACGAGCTGCCGCCCAATCGGACACCGGTGAAAACTCGTTTGGTGAATAGCG
CACGCCGTGCCGAAGTGGAAGGTTTTGTATTGAATACCTGCCGCAAAGGGCAGCAGGTGTATTGGGTTTGCCCGCTAATT
GAAGAAAGTGAAGTATTACAGCTTCAGACGGCTGTTGATACGCTGGCCGAGCTTCAGACGGCCTTACCTGAATTAACCGT
CGGGTTGGTACATGGGCGGATGAAGGCGGCTGAAAAAGCAGCGGTTATGGATGAGTTTTCCTCAGGCCGTCTGAATGTTT
TGGTGGCGACTACGGTGATTGAAGTCGGTGTGGATGTGCCTAATGCCAGTCTGATGGTGATCGAACATGCCGAACGTATG
GGCTTGGCTCAGCTGCATCAGTTACGCGGCAGAGTGGGGCGTGGTGCGGCAGTCAGCACTTGCGTATTGCTGTTTTCGGA
ACCGTTAAGTGATTTGGCTAAGGCACGTTTAAAAGTTATTTATGAGCATACCGACGGTTTTGAAATCGCACGCCAAGATT
TGAATATCCGCGGGCCGGGCGAGTTTCTCGGTGCCCGTCAAAGCGGTGTGCCCATGTTACGCTTCGCTAATCTTGAAGAA
GATTTATATTTACTTGAGCATGCCCGCGAAATAGCCCCCCGTTTAATTGCCGAGCGGCCGGATATCGTCGAAGCACATTT
GGCACGATGGTTGGCGAGTAGGGAAAATTATTTGGGGGTATAG

Domains

Predicted by InterproScan.

RecG wedge domain (RecG_wedge)

(12-167)

DEAD/DEAH box helicase (DEAD)

(282-419)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(604-665)

Helicase conserved C-terminal domain (Helicase_C)

(468-575)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

82.059

100

0.821

Multiple sequence alignment