Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   D0T92_RS08875 Genome accession   NZ_CP031700
Coordinates   1918629..1919312 (-) Length   227 a.a.
NCBI ID   WP_151052096.1    Uniprot ID   A0A5J6Q122
Organism   Neisseria zalophi strain ATCC BAA-2455     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1913629..1924312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0T92_RS08845 (D0T92_08905) pdxH 1914884..1915516 (+) 633 WP_151052091.1 pyridoxamine 5'-phosphate oxidase -
  D0T92_RS08850 (D0T92_08910) - 1915575..1915688 (+) 114 Protein_1727 IS1595 family transposase -
  D0T92_RS08855 (D0T92_08915) - 1915854..1916312 (-) 459 WP_151052093.1 PilX family type IV pilin -
  D0T92_RS08860 (D0T92_08920) pilK 1916325..1916876 (-) 552 WP_151052094.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  D0T92_RS08865 (D0T92_08925) - 1916855..1917850 (-) 996 WP_151053043.1 PilW family protein -
  D0T92_RS11610 pilV 1917853..1918569 (-) 717 WP_225315101.1 type IV pilus modification protein PilV -
  D0T92_RS08875 (D0T92_08935) pilH 1918629..1919312 (-) 684 WP_151052096.1 GspH/FimT family pseudopilin Machinery gene
  D0T92_RS08880 (D0T92_08940) dnaB 1919517..1920926 (-) 1410 WP_151052098.1 replicative DNA helicase -
  D0T92_RS08885 (D0T92_08945) - 1921151..1921732 (+) 582 WP_151052101.1 superoxide dismutase -
  D0T92_RS08890 (D0T92_08950) - 1921906..1922181 (+) 276 WP_151052103.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25310.63 Da        Isoelectric Point: 8.7581

>NTDB_id=310562 D0T92_RS08875 WP_151052096.1 1918629..1919312(-) (pilH) [Neisseria zalophi strain ATCC BAA-2455]
MRLKNQGFTLTELLIVIAIVAIMATIALPNMSDWIASRRTASQAEQVVNLLRFARSEAVRLNVPVYVCPVAIRKDGNPDK
YCDHSYAGEGLAAFADNNKDGSYTRNNDTNLRTVILNMQDQKRVSYQFETYDFKYTKTGNNKVWGFLPNGMFGHAKNAGD
KLSIASGFVKISLTDSVARDERTKKSRSRIVWLDSSGRVNECSGDSIVKDDNENSMAATLCEYKTAE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=310562 D0T92_RS08875 WP_151052096.1 1918629..1919312(-) (pilH) [Neisseria zalophi strain ATCC BAA-2455]
ATGCGTTTAAAAAATCAAGGTTTTACATTAACTGAATTGTTGATTGTCATCGCTATTGTAGCGATTATGGCAACTATCGC
CCTCCCTAATATGAGCGACTGGATAGCCTCCCGCCGTACAGCGAGTCAGGCCGAGCAGGTCGTTAATCTTTTACGCTTCG
CGCGTAGTGAAGCAGTTCGTTTGAATGTTCCCGTTTATGTTTGTCCGGTTGCTATTAGAAAAGACGGCAATCCGGATAAA
TATTGTGATCATAGCTATGCAGGTGAAGGTCTTGCCGCATTTGCCGATAACAACAAAGATGGTAGCTATACACGTAATAA
TGATACTAATTTACGTACGGTGATCTTGAATATGCAGGATCAGAAACGGGTTAGCTATCAATTTGAAACTTATGATTTTA
AATATACCAAAACAGGGAACAATAAAGTATGGGGATTCTTGCCCAACGGTATGTTTGGTCACGCCAAAAATGCAGGTGAT
AAGCTGAGTATTGCCAGCGGGTTCGTTAAGATTTCTTTAACGGACAGTGTAGCCAGAGATGAGCGTACTAAAAAATCGCG
TTCCCGTATTGTTTGGTTAGACAGTAGTGGCAGGGTAAACGAGTGTTCGGGCGATTCAATCGTTAAAGATGATAATGAAA
ATAGTATGGCTGCTACTTTGTGTGAATATAAAACAGCTGAATAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(43-163)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6Q122

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

53.171

90.308

0.48

Multiple sequence alignment