Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   D0T92_RS07655 Genome accession   NZ_CP031700
Coordinates   1648159..1648968 (+) Length   269 a.a.
NCBI ID   WP_151051705.1    Uniprot ID   A0A5J6PV41
Organism   Neisseria zalophi strain ATCC BAA-2455     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1643159..1653968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0T92_RS07620 (D0T92_07675) - 1643159..1644151 (+) 993 WP_151051691.1 asparaginase -
  D0T92_RS07625 (D0T92_07680) - 1644272..1644457 (+) 186 WP_151051693.1 DUF3460 family protein -
  D0T92_RS07630 (D0T92_07685) - 1644485..1645153 (+) 669 WP_151051695.1 class I SAM-dependent methyltransferase -
  D0T92_RS07635 (D0T92_07690) - 1645168..1645863 (+) 696 WP_151051697.1 tol-pal system YbgF family protein -
  D0T92_RS07640 (D0T92_07695) purE 1646096..1646584 (+) 489 WP_151051699.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  D0T92_RS07645 (D0T92_07700) crcB 1646641..1647018 (+) 378 WP_151051701.1 fluoride efflux transporter CrcB -
  D0T92_RS07650 (D0T92_07705) rluD 1647042..1648160 (-) 1119 WP_151051703.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  D0T92_RS07655 (D0T92_07710) comL 1648159..1648968 (+) 810 WP_151051705.1 outer membrane protein assembly factor BamD Machinery gene
  D0T92_RS11770 (D0T92_07715) - 1649515..1650972 (+) 1458 WP_151051707.1 YadA-like family protein -
  D0T92_RS07665 (D0T92_07720) - 1651128..1653200 (-) 2073 WP_151051709.1 DUF262 domain-containing protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 31233.24 Da        Isoelectric Point: 8.5376

>NTDB_id=310559 D0T92_RS07655 WP_151051705.1 1648159..1648968(+) (comL) [Neisseria zalophi strain ATCC BAA-2455]
MKKILLVISLGLALAGCAGTTGTIDKDAQITQEWTVERLYAEAHDELNSSNYTRAIKLYEILESRFPNGRYAQQAQLDTA
YAYYKDDEPEKALAAVERFQRIHPRHPNMDYALYLKGLILFNEDQSFLNRLASQDWSDRDPKANRDAYQAFSQLIELYPN
SRYAPDAAERMTKLVDALGGNEMAVARYYMKRGAYLAAANRAQKIVERYQNTRFVEESLAIMEASYRKLNKPQLADDTRR
ILAQNFPNSPYLQKSWQENSSIPWWRYWK

Nucleotide


Download         Length: 810 bp        

>NTDB_id=310559 D0T92_RS07655 WP_151051705.1 1648159..1648968(+) (comL) [Neisseria zalophi strain ATCC BAA-2455]
ATGAAAAAAATTCTTTTAGTAATCTCATTAGGTTTGGCTTTGGCCGGCTGCGCCGGAACCACTGGCACGATTGATAAAGA
CGCGCAAATCACTCAGGAATGGACAGTCGAAAGACTGTATGCCGAGGCGCACGACGAGCTCAATAGCAGTAATTATACGC
GAGCCATCAAGTTATACGAAATTTTGGAATCCCGCTTCCCCAACGGTCGCTATGCCCAACAAGCACAGCTTGATACAGCT
TACGCCTATTATAAAGACGACGAGCCGGAAAAAGCACTTGCAGCTGTTGAGCGTTTCCAACGTATCCATCCGCGCCATCC
GAATATGGATTATGCCCTATATCTTAAAGGTTTGATTTTATTTAACGAAGATCAATCTTTTTTAAATAGATTAGCCTCTC
AAGACTGGTCAGACCGCGATCCTAAAGCCAACCGTGATGCCTATCAGGCATTTTCACAGCTGATCGAACTCTATCCAAAC
AGCCGATATGCCCCGGATGCTGCCGAAAGAATGACAAAACTGGTGGACGCTTTGGGTGGCAATGAAATGGCTGTTGCTCG
TTACTATATGAAACGCGGTGCTTATCTCGCTGCTGCCAATCGCGCACAAAAAATAGTTGAGCGTTATCAAAATACCCGCT
TTGTAGAAGAATCACTTGCCATTATGGAAGCTTCTTACCGCAAGCTGAACAAACCACAGTTAGCCGATGATACCCGCCGA
ATTTTGGCACAAAACTTCCCCAATAGCCCCTATCTACAAAAAAGCTGGCAGGAAAATAGTAGTATTCCGTGGTGGCGTTA
TTGGAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6PV41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

76.119

99.628

0.758
  comL Neisseria meningitidis MC58

75.746

99.628

0.755

Multiple sequence alignment